Detailed information on CNT30404916


BLAST search results

BLAST vs Swiss-Prot:
sp|P42767|PIP1_ATRCA, E-value = 2e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30375144Beta vulgarisArabidopsis thaliana27.927.983.19113forward
CNT30525480Beta vulgarisPhaseolus vulgaris23.214.3986.1794forward
CNT30502187Beta vulgarisNicotiana attenuata22.722.5383.792forward
CNT3044720Beta vulgarisPrunus dulcis23.4614.4284.2195forward
CNT30159582Beta vulgarisPistacia vera17.5327.4190.1471forward
CNT3096145Beta vulgarisSolanum tuberosum24.27.8188.7898forward
CNT30145515Beta vulgarisMedicago truncatula19.5132.2484.8179forward
CNT3062229Beta vulgarisArabidopsis lyrata20.4918.0489.1683forward
CNT30477407Beta vulgarisArabidopsis halleri22.2214.1185.5690forward
CNT30704968Beta vulgarisPrunus avium21.989.8783.1589forward
CNT3035626Beta vulgarisCucumis melo21.9815.8984.2789forward

Expression of CNT30404916

Peptides detected in this lncRNA

>peptide 1 (57 aa)
RLLIIKYNSSSKASSRVNTSTSNGNSSQMNHKHSKTNRKRSKNRHMRVTCTSLRVSC*

Sequence

>CNT30404916
CGCCTTCTTATCATTAAATATAACAGCAGCTCCAAAGCTTCTAGCAGGGTTAATACCAGTACCAGTAATGGGAATAGTAGCCAAATGAACCATAAACACA
GCAAAACCAATAGGAAGAGGAGCAAGAATAGGCACATGAGAGTCACGTGCACTTCTCTTAGGGTCAGTTGCTGAGAAAACAGTGTAAACCAAAACAAAAG
TTCCAATAATTTCAGCTCCAAGAGCAGTACCCTTGTTATAACCATGTTGTACAGAGTTGGCCCCACTCATGAAAGCTTTAACTAACCCTACACCACAGAT
GGCACCTGCGCATTGGCCTACCATGTAGAAGAATGCTCGTAGCAATGAAACTTTCCTTGCTAGGAACAAACCGAAGGTTACTGCTGGATTGATGTGTCCT
CCTGA