Detailed information on CNT30636643


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ATM6|PIP24_MAIZE, E-value = 1e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020673Capsicum annuumCitrullus lanatus22.039.7883.65104forward
CNT3070602Capsicum annuumQuercus suber16.3124.4487.0177forward
CNT30525480Capsicum annuumPhaseolus vulgaris20.554.5384.5497forward
CNT30632234Capsicum annuumVigna unguiculata18.0124.8584.7185forward
CNT30712585Capsicum annuumGlycine max10.5921.379250forward
CNT3096145Capsicum annuumSolanum tuberosum73.5227.6790.78347forward
CNT30572629Capsicum annuumVitis vinifera20.1335.7183.1695forward
CNT30120694Capsicum annuumCitrus clementina16.9532.798580forward
CNT30176173Capsicum annuumVigna angularis16.3125.2589.6177forward
CNT30724885Capsicum annuumLupinus angustifolius26.4813.9284125forward

Expression of CNT30636643

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYIIARTNDTFRAKKSPNVTAGLMCPPEIPAVQ*

Sequence

>CNT30636643
CCCAGGCTTTGTCTTTGCCATAAATAACAGCGGCCCCAAAACTCCTAGCAGGATTAATACCAGTTCCAGTAACAGGTATTGTTGCTAAGTGAACCATGAA
CACCGCGAATCCAATTGGAAGTGTAGCGGCAAAGACGGTGTAAACAAGAACAAAAGTGCCAATAATCTCAGCACCCAAACCAGTACCCGTGCTATATCCA
TCATTCAATGTATTAGCACCACCACCATGCCTAAAATAGTAAGCCTTTTGAAAAGCCTTGACCAAACCACAACCACAAATGGCTCCTAAACACTGAGCCA
CAATGTACATAATAGCCCGAACCAACGATACTTTTCGGGCCAAGAAAAGCCCGAATGTGACAGCAGGGTTAATGTGTCCACCAGAAATACCAGCAGTGCA
ATAAACAAGTACGAATATCATACCCCCAAAGGCCCAAGCAATTCCAAGAATGCCAACACCACCACATTGGTC