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Detailed information on CNT30728842


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615812Corchorus capsularisSesamum indicum13.8322.5491.6748forward
CNT3070603Corchorus capsularisQuercus suber27.382583.1695forward
CNT30525480Corchorus capsularisPhaseolus vulgaris25.654.1687.6489forward
CNT30632211Corchorus capsularisVigna unguiculata25.9429.6184.4490forward
CNT30502187Corchorus capsularisNicotiana attenuata24.782.3790.786forward
CNT30710681Corchorus capsularisGlycine max40.6319.4883.69141forward
CNT3044723Corchorus capsularisPrunus dulcis28.2410.7386.7398forward
CNT30159582Corchorus capsularisPistacia vera21.3328.5790.5474forward
CNT3096145Corchorus capsularisSolanum tuberosum26.87.4287.193forward
CNT30145515Corchorus capsularisMedicago truncatula24.2134.2986.984forward
CNT30599410Corchorus capsularisFraxinus excelsior25.6513.4285.3989forward
CNT30704435Corchorus capsularisPrunus avium28.2414.8387.7698forward
CNT30120512Corchorus capsularisCitrus clementina26.5130.7788.0492forward

Expression of CNT30728842

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MLLAGDMGVSSISLRISSRENSVNQNKGSNNFSTQTSTNTESFCNRVGSTSIHHIVCFLQSLDDSNPTNGSQRLSHYVCNGSNQ*

Sequence

>CNT30728842
ATGATTTTCCCATGTCTCATGCTTGCCGTAGATAACAGCAGCTCCAATGCTCCTAGCAGGGGACATGGGAGTCTCTAGCATTTCTCTTAGGATCAGTAGC
AGAGAAAACAGTGTAAACCAAAACAAAGGTTCCAATAATTTCAGCACCCAAACCAGTACCAACACTGAATCCTTCTGCAACAGAGTTGGCTCCACCTCCA
TACATCATATAGTTTGTTTCTTGCAAAGCCTTGACGATTCCAACCCCACAAATGGCTCCCAAAGACTGAGCCACTATGTATGCAATGGCTCGAACCAGTG
ACACCTTCCGGGCAAGCAACAGCCCAAATGTCACTGCTGGGTTAATG