Detailed information on CNT3096043


BLAST search results

BLAST vs Swiss-Prot:
sp|P26600|PAL5_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT002996, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317648Solanum tuberosumCorylus avellana19.7233.9782.74197forward
CNT30630760Solanum tuberosumVigna unguiculata15.2220.1383.55152forward
CNT30225299Solanum tuberosumHordeum vulgare14.7143.4980.95147forward
CNT30568715Solanum tuberosumActinidia chinensis24.5250.283.67245forward
CNT30113881Solanum tuberosumFicus carica28.4326.4478.17284forward

Expression of CNT3096043

Peptides detected in this lncRNA

>peptide 1 (37 aa)
ETYSSLREFKHSLKLTKKDVSSQHIMIVIHHKSKKRI*

>peptide 2 (37 aa)
MSTASAVFLAEIKPKEFTSWLCCSALWTWLVTGFAKN*

>peptide 3 (35 aa)
MTLASRCPQPQQFSLLRLSLRNSHLGCVAQHFGHG*

>peptide 4 (33 aa)
MINKDLSQLLHQRVGAAAGVISIGKQVFPFHNL*

>peptide 5 (44 aa)
MKFTISTHCQSLFGYLAYGVLDSILQVLLQMPQVDSLAKRHEIG*

>peptide 6 (39 aa)
MVSHWICQELKLRAVRSHRNFSSFETIVQAWIPSCCEIRW

Sequence

>CNT3096043
GAGACATATTCATCTTTAAGAGAGTTTAAACACTCTCTCAAGTTAACCAAAAAAGATGTAAGTTCACAACATATTATGATAGTAATTCACCATAAGAGTA
AAAAAAGAATCTGAAAAATAGCACTAGACAAGCATTAACAACTGGTCCTTTATCTGGCAAACATTTAGCAGATTGGAAGAGGAGCACCATTCCAGCTCTT
GAGACACTCCAACAATGGATCAATAATCTGTCCATTGCACATTGCTGTGAACACCTTGTCAATCTCCTCACCGGGCGATCGAACTTTTTCACCTGTCAAC
AGTTCTGATCCAAGTTCTTGTCTCACCAACCTGTACAATGGATATGATCTGCATTCTGTTATCCTGTTAGGAATTACAGGGTTGCCACTTTCAAGCATAG
CTCTTGCACTCTCAACTTCTTTAGGCAACACAGCCTTCAATTCGTCCTCGAAAGCTACAATCTTTTGGAAGATTGAGCTGTTCACATTCGACTCACTTTC
ACCATTCTTCATTGCATGATCAACAAGGACTTGTCTCAGCTTCTGCATCAAAGGGTAGGTGCAGCTGCAGGGGTCATCAGCATAGGTAAACAAGTATTCC
CTTTCCACAACTTGTAGCAATTCCTTTTCACAGAATCTTGCTGGATGAAGTTCACCATTAGCACCCATTGTCAAAGTCTTTTTGGCTACTTGGCTTACGG
TGTTCTTGACAGCATTCTTCAAGTTCTCCTCCAAATGCCTCAAGTCGATAGCCTGGCAAAGCGCCACGAGATAGGTTGATGACATTAGCTTCAAGATGTC
CACAGCCTCAGCAGTTTTCCTTGCTGAGATTAAGCCTAAGGAATTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTTAGTCACTGGATTTGCC
AAGAATTGAAGCTCCGAGCAGTAAGAAGCCATCGCAATTTCAGCTCCTTTGAAACCATAGTCCAAGCTTGGATTCCTTCCTGCTGTGAGATTAGATGGC