CANTATAdb - search

Detailed information on CNT30650923

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 5e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30728131	Rosa chinensis	Corchorus capsularis	23.7	33.96	80.77	182	forward
CNT30381636	Rosa chinensis	Manihot esculenta	17.32	20	81.95	133	forward
CNT30717384	Rosa chinensis	Malus domestica golden	91.8	99.3	83.83	705	forward
CNT30113624	Rosa chinensis	Ficus carica	21.48	21.07	82.42	165	forward

Expression of CNT30650923

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MMYPSLPHVSSATDRTQPAQEHGALYHHLLRPLASFLVEEVEVGHLVEEVVMVSHSREWELYQQGHLQI*

>peptide 2 (31 aa)
SPIMLLLALDTFDDVDIKDDVSFFASRFISD*

Sequence

>CNT30650923
TCTCCCCAATCATGTTGCTCCTTGCACTAGATACATTCGATGATGTAGATATTAAAGATGATGTATCCTTCTTTGCCTCACGTTTCATCAGCGACTGATA
GAACTCAACCAGCTCAGGAGCACGGTGCACTTTATCACCACCTCCTGCGCCCCTTGGCAAGCTTCCTGGTGGAGGAGGTGGAGGTGGGCCACCTGGTGGA
GGAGGTGGTAATGGTATCCCACTCGAGGGAGTGGGAGTTGTACCAACAGGGGCACCTCCAGATTTAGGAGGTGGCCGAGGCACCCTAGGAGGTCTCTTCT
CAATTTGAGCAAGTTTCATCTTGCTTATTTCTTGAGGATCAAAAGCCTTACCACCATCCGCTTGGTTGCTTGAATCACCCGAAATAACTGCCTTCTCCTT
TATAAGGGTAAGTTTGGGTGGCAAACTAACTATTCTATCCTTGTCAGCTTTTGTTCTAGGCTCGTAGCTGAAACTTACATTTGATTTATCACCAAACTTC
TCTGCTCTTGCCTGATCAGCCCTTTCCTTAATTTGTTTTTCCCTCTCTAAGGCCAACTTATGGCGATCCTTATACGCAGGATATTTCTCATCTAGAACTC
CTTCAACAGATTTAGACATCACATGGAAAGATGATGAAACAGAATTAGGTGAGTTGCTAGAAGGCATTTGTGTTCTAATGTTTGGAAGAGTGGGTGTTTG
AGGAGAGTCTGGAAGTTCCTGGTCCATCTTCCCAAATGTAGTGATTGCTACACCATCGCTTGCATTCC