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Detailed information on CNT30722589


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-100

BLAST vs NONCODE:
NONMEST001181, E-value = 3e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30309070Triticum speltaTriticum aestivum10044.89100738forward
CNT30397549Triticum speltaTriticum turgidum58.464.7194.2431forward
CNT30441445Triticum speltaAegilops tauschii10099.19100738forward
CNT30667543Triticum speltaTriticum dicoccoides66.830.6492.9493forward
CNT30141933Triticum speltaLolium perenne65.4566.9993.79483forward

Expression of CNT30722589

SRR9114152: 4.13 RPKM

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSDDSTSRVMVLPVRVFTNICICKYKVNPE*

>peptide 2 (61 aa)
MRRCWSGGMPSLSWIFAFTLSMVSEDSTSRVMVLPVRVLTKICIPPRRRSTRWRVDSFWML*

>peptide 3 (32 aa)
LTQITHDIKSSLINHSSPSKATASNRHNRTDQ*

Sequence

>CNT30722589
CTGACACAAATTACGCACGATATTAAGAGCTCCCTTATTAATCATAGTTCACCATCCAAAGCCACGGCAAGTAATCGACACAACCGAACAGATCAGTAAT
CGACACAACCGAACAGATCAGTGATGGAAACAACGACACGACCAGACAAGCGCACCTATTGGAGGACACCGACGACACAAGACCTGTGAACCCAACAGAA
GCCACACCGTGACCAGGCACTTACTGGCCACCACGCAGGCGAAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCAT
CCTCAAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGA
CTCCACCTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATACCACCACGAAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGG
ATGTTGTAGTCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTAAATCTTCG
CCTTGACGTTGTCGATGGTGTCCGATGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCATCTGTAAATACAAAGTAAA
CCCAGAGTAAGAAGCAGTTGAAAGGGAACATGCAGGAC