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Detailed information on CNT30715955


BLAST search results

BLAST vs Swiss-Prot:
sp|Q02980|RBS_MALSP, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514732Malus domestica goldenJuglans regia30.079.3786.7583forward
CNT3020337Malus domestica goldenCitrullus lanatus28.269.7189.7478forward
CNT30648337Malus domestica goldenRosa chinensis26.0915.6590.2872forward
CNT30153087Malus domestica goldenPrunus persica21.7425.7591.6760forward
CNT30705707Malus domestica goldenPrunus avium36.598.9690.1101forward

Expression of CNT30715955

Peptides detected in this lncRNA

>peptide 1 (84 aa)
PTQIPSREPSFCGGGNQLPWPRTRKREEEGKRGSRTSSIQVEASEWSNHAGLSRGGTVGVNCRHGSGGNHGGSHCSLSLLSLLC*

>peptide 2 (52 aa)
LQLKFQAGNPVFAEEVINFLGQGLGRERRKVREGLELLQSKWRPVNGATMLA*

Sequence

>CNT30715955
CTCCAACTCAAATTCCAAGCAGGGAACCCAGTTTTTGCGGAGGAGGTAATCAACTTCCTTGGCCAAGGACTCGGAAGAGAGAGGAGGAAGGTAAGAGAGG
GTCTCGAACTTCTTCAATCCAAGTGGAGGCCAGTGAATGGAGCAACCATGCTGGCTTGAGCCGGGGCGGCACGGTCGGCGTAAACTGTAGACACGGTAGC
GGAGGAAATCATGGAGGAAGCCATTGCTCTCTCTCTCTGCTTTCTCTTCTTTGCTAGAGTGCTTTACTTCTCTTGG