Detailed information on CNT30648337


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30715955Rosa chinensisMalus domestica golden15.6526.0990.2872forward
CNT30597252Rosa chinensisOryza meridionalis31.0931.4385.31143forward
CNT30153087Rosa chinensisPrunus persica13.0425.7593.3360forward
CNT30104366Rosa chinensisOryza rufipogon23.2614.8888.79107forward
CNT30604902Rosa chinensisOryza punctata19.5727.6987.7890forward

Expression of CNT30648337

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MDGRMKQMTNASELEACRLVGDETDALHLTDVVESDDTDESIWVCLLDLLELLQHLCRVGASEHG*

>peptide 2 (54 aa)
MIRTKASGCAFLTSSSSFNTCAESVHPNMGNQLPWPRTREKVVEGRTESRTSSYQ

>peptide 3 (51 aa)
RETEPNSKQTRLSRKRKEKERCCTCSLIKTNTNSNWNSKGTTNGPSNSLKS*

Sequence

>CNT30648337
CGAGAAACAGAACCAAATTCGAAACAAACAAGATTGTCTCGAAAAAGGAAAGAGAAAGAACGGTGTTGCACATGCAGCCTAATTAAAACAAATACAAATT
CAAATTGGAATTCAAAGGGAACCACAAACGGACCCAGCAACAGCTTAAAAAGCTAGCTCCAGGGGTACATTACATTAGATATAAAGGATGGATGGGCGGA
TGAAACAAATGACTAATGCAAGTGAATTAGAAGCCTGCAGGCTTGTAGGCGATGAAACTGATGCACTGCACTTGACGGACGTTGTCGAATCCGATGATAC
GGACGAAAGCATCTGGGTGTGCCTTCTTGACCTCCTCGAGCTCCTTCAACACTTGTGCAGAGTCGGTGCATCCGAACATGGGTAATCAACTTCCTTGGCC
AAGGACTCGGGAGAAAGTGGTGGAAGGTAGGACAGAGTCTCGAACTTCTTCATACCAACT