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Detailed information on CNT3020337


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501576Citrullus lanatusCoffea canephora5.8520.5291.4947forward
CNT30715955Citrullus lanatusMalus domestica golden9.7128.2689.7478forward

Expression of CNT3020337

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRRGSASWPPQSPESPEPHRCNQTWAGNPSLPEKVLYFFRQLGLIKIRQVRQSLELLQSKWWPVKGATMLA*

>peptide 2 (33 aa)
VEWLKLIQSYRYRESNVHHTHTNPNRRLHSELD*

>peptide 3 (75 aa)
MESARVELRGLVDNETDALDLTDVVKANNPDECVGVVLLGLLNLLNHLSRIGATKHGQGTHPFLRRYSTSFANWV*

>peptide 4 (77 aa)
MHTGFIGNLTTNQSIIYSNSNWKVEEINIGIEVHRSKRKRKKKKKMGNWIESQVMWKRGGKRQMLEIRLKKAGNGIS*

Sequence

>CNT3020337
GTTGAGTGGCTGAAATTGATTCAATCTTATCGTTATCGTGAATCTAATGTGCATCATACACACACAAACCCGAATCGAAGATTGCACAGCGAATTAGATT
GAATTCCAGAAGAAAGATGCATACAGGATTCATAGGGAATTTAACAACAAATCAAAGCATCATTTATTCCAATTCGAATTGGAAAGTCGAGGAAATAAAC
ATAGGGATTGAAGTACACAGATCAAAACGTAAAAGGAAAAAAAAAAAAAAAATGGGAAATTGGATTGAAAGCCAAGTGATGTGGAAGCGAGGTGGAAAAA
GGCAAATGCTGGAAATTCGCCTCAAGAAAGCTGGGAATGGAATCAGCTAGAGTAGAACTTAGGGGGCTTGTAGACAATGAAACTGATGCACTGGACTTGA
CGGACGTTGTCAAAGCCAATAACCCTGATGAATGCGTCGGGGTAGTGCTTCTTGGCCTCCTCAATCTCCTGAATCACCTGAGCCGCATCGGTGCAACCAA
ACATGGGCAGGGAACCCATCCCTTCCTGAGAAGGTACTCTACTTCTTTCGCCAATTGGGTTTGATCAAGATCAGGCAGGTAAGACAGAGTCTCGAACTTC
TTCAATCCAAGTGGTGGCCAGTGAAGGGTGCTACCATGCTAGCTTGAGCAGGGGAGGCCCTGTTCACAGAGGCAACAGCCGCGGATGAGACGATGGAGGA
AGCCATTGATGCCTCTTTTCCTTGGGAGTTTAGAGGGATTTACTAGAAGCTAGCTAGTAGAGTGCTTGAAAGCTCTTGCTGTTGGGTCTGAGAGGCCTTG
TAC