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Detailed information on CNT3024061


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 3e-101

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-87

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701273Populus trichocarpaQuercus lobata64.2371.4385.38465forward

Expression of CNT3024061

Peptides detected in this lncRNA

>peptide 1 (42 aa)
FKVNFTGNQECIKKRKFIAVNQRRVYDFLKPDRNHNQTAYLK*

Sequence

>CNT3024061
TTTTAAGGTGAATTTCACAGGCAATCAGGAATGTATTAAAAAGAGGAAATTTATTGCAGTAAATCAAAGACGAGTTTATGACTTCCTTAAACCAGACAGA
AACCATAACCAAACAGCATACTTAAAATAGTTCCGAGAACATTATAGATTCCCTTTAACAATTGCCAGTTACCACCAACAGAACCACAAATACTAGCATC
ATCACTGTTTAGAAACCACCACGGAGGCGAAGCACGAGGTGCAGAGTGGACTCCTTCTGGATATTGTAATCAGCCAAGGTCCTTCCATCTTCAAGCTGCT
TCCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCCTGGATTTTGGCCTTAACATTGTCAATTGTGTCCGAGCTCTCAACTTCCAA
GGTGATTGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCA
GCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTAT
CAATAGTATCCGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATCTGATCACATAACAAAACACGGACAAGATC
AGCCAATTTCAAAAATAGGAAAAA