Detailed information on CNT30171998


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 7e-106

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701273Trifolium pratenseQuercus lobata86.0561.685.04401forward
CNT30147127Trifolium pratenseMedicago truncatula96.5799.5690.89450forward

Expression of CNT30171998

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VSKGPSILQLLASKDQPLLIWWDSLLVLYFCLDIIDRI*

>peptide 2 (32 aa)
SQQGSFHPPIACQQRSTSADLVGFPPCLVFLP*

>peptide 3 (88 aa)
MKGGFLLDVVIGQGPAIFELLSSKNQPLLVWWDSLFVLNLGLDIVNGIRALHLKGDCLSGEGLNKYLHTTTETEHQMEGRLLLDVVIGK

>peptide 4 (40 aa)
MVSELSTSRVIVFPVRVLTNICIPPRRRSTKWRVDSFWML*

Sequence

>CNT30171998
AGTCAGCAAGGGTCCTTCCATCCTCCAATTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGTATTTTTGCCTTGAC
ATTATCGATCGTATCTGAACTTTCTACCTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTCACAAAGATCTGCATACCTCCCCTCAGACGAAGGACAAGA
TGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCCAAGGTCCGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTC
CCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTGATTGTCTTTCCGGTGAGGGTCTTAACAAATATTTG
CATACCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCCTTTTGGATGTTGTAATCGGCAAG