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Detailed information on CNT30500521


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-102

BLAST vs NONCODE:
NONTPRT002153, E-value = 1e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701273Coffea canephoraQuercus lobata62.0269.7485.9454forward
CNT3069548Coffea canephoraQuercus suber61.3463.2485.08449forward

Expression of CNT30500521

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVSVFTKIC

>peptide 2 (61 aa)
MQHSETTTQTQDKVKGGLFLDVIICQSPSIFQLFTSKDQSLLVRWDPLLVLDLSLDVINRI*

Sequence

>CNT30500521
TGAGAGAATGCTAATATCGATTAAAAGTAAAATTTCCAGGGTGTAAATATTGAAAACTTCGGAACTTTATTAACTTATCAAATAACACCGCCATTAATTC
CCATCACAAACATGGAACACCACCACCAAATCCCCAAACTATACATTTGAAAAAAAACACACTTAGGAAGCTATTAGGGCCCATGGCTTGGACACGGACA
GAAATCAAGCAGACAAACACAAAAGACTACCAACTTCAAGAGACAGCCTTCAACTGCATATAGATGCAGCATTCAGAAACCACCACGCAGACGCAGGACA
AGGTGAAGGGTGGACTCTTTCTGGATGTTATAATCTGCCAAAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGCTGGTCAGGTGGGA
TCCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCAATCGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAGAGTCTTGACAAAAAT
TTGCATTCCTCCTCGCAACCTGAGCACCAGATGAAGGGTTGATTCCTTCTGGATGTTGTAATCTGCAAGGGTCCGGCCATCCTCAAGCTGCTTACCAGCA
AAGATCAACCTTTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTAACATTATCAATTGTGTCAGAGCTTTCAACCTCAAGAGTGATGG
TCTTCCCGGTGAGTGTTTTCACAAAGATTTGC