« Back to Setaria viridis search


Detailed information on CNT30678415


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L389|YCF4_SACHY, E-value = 1e-85

BLAST vs NONCODE:
NONOSAT000331, E-value = 2e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Setaria viridisOryza sativa83.8619.3591.72894forward
CNT30616037Setaria viridisSesamum indicum30.6814.7685.02327forward
CNT3018021Setaria viridisZea mays85.7423.5597.48914forward
CNT3058960Setaria viridisAmborella trichopoda34.7118.1686.76370forward
CNT30575002Setaria viridisOryza barthii10.7943.7398.26115reverse complement

Expression of CNT30678415

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MHEFMLVAYICIHRRFSFVCRKSYIPYHIILLTQKNICIMILEIH*

>peptide 2 (54 aa)
MEVRISYSYQDNWKPQPLRILMNLEKEYRPRKNYLFFENLLEVLSICVLIANSY*

Sequence

>CNT30678415
ACGATAAATACAAGATATAGGAAAGAAGGCAATGCTTTCTTTTTTTTCATTTTTGATCTGTAAATTGAGTTGTTAATGAATCCGCTTCATTCGCCGACTC
TATTTCATTCGCTGAATATATATGATATTTCTTTTCTTTGAAACACAAATTCTATAACAAGGAATCGAAGGAAGATGCGACGTTTTATTCCAGGGAATCC
CCAACGAAAAATGCACACTATTCCCTCTTTTCTATCGAATCGGTCATAACCACTGCCTACATTCCACAAAATAGTGCACCACAAATAGGAGCTAATGAAT
AGGCCCGCGATTCCGTAGAAAGACATCACGACCCCCTGTGGAAAAAAAAGAATTTGTTGAGATGGAAGTACGGATATCATATTCTTACCAAGATAACTGG
AAGCCCCAACCGCTAAGAATCCTAATGAACCTAGAAAAAGAATACAGGCCCAGAAAAAATTACCTCTTTTTCGAGAACCTTTTAGAAGTTCTATCCATAT
GTGTTCTGATCGCCAATTCATATTAGATATACTAAATCCAGTAGCGGTCAATTGAAATTGAGAGAATAAGCTAAATGATTTTGACTTTACTTTTTTTGAT
TCTGAAATAACCTTCAGTAGCTAGTACTCCTGTGAAATAATTGGTTAGATACATTGACTTTCTATTCAAAAAGAATTCGTGGATCCACTTAAAAAAAACT
CGCTATACTCGGCTACGCATATGCATGAATTTATGCTCGTAGCCTATATCTGCATCCATAGACGTTTTTCATTTGTGTGTAGAAAGAGCTACATACCCTA
TCATATTATATTACTTACACAAAAAAATATCTGTATTATGATCCTGGAAATACATTAAGAAAATTGGGCCCCGTCGTTTCTAGACAATCTTATTTTTCTG
CACATAAAGAAATAAGGAAGCCATTGCAATTGCTGGAAATACTAAGCCTACTAAAGGCACGAAAATAGAGGGTAAGTTAAAATCTGTCATAGAATATGTG
TCTCAATTCAAATTTACTATTTCTATCTATTCGAAATATATCTTAAGATTCTTATGATATAATTAA