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Detailed information on CNT3058960


BLAST search results

BLAST vs Swiss-Prot:
sp|Q70XZ4|ACCD_AMBTC, E-value = 7e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678415Amborella trichopodaSetaria viridis18.1634.7186.76370forward
CNT30632299Amborella trichopodaVigna unguiculata16.5923.0483.73338forward
CNT30198060Amborella trichopodaPisum sativum9.5270.886.08194forward
CNT3047368Amborella trichopodaPrunus dulcis7.8521.7189.38160forward
CNT30589396Amborella trichopodaMusa acuminata4.8125.3289.898forward
CNT30172172Amborella trichopodaTrifolium pratense11.4429.9584.55233forward
CNT30610466Amborella trichopodaGossypium raimondii14.0434.8483.57286forward
CNT30227829Amborella trichopodaAnanas comosus5.6524.4792.17115forward
CNT30323690Amborella trichopodaAsparagus officinalis20.3716.2788.92415forward
CNT30149719Amborella trichopodaBrachypodium distachyon4.4239.4786.6790forward

Expression of CNT3058960

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LIDRISLIRNRKKIRRFLPGNPQRKIHTIPSFLSNLS*

>peptide 2 (92 aa)
MRILLFPRPYVSKVSHEFSKDSLELDPRGIHTKKGFWYSGRYINMQDSYSYIRIRIRMSLLEYLIHNKNMKSFFSLISILRNENLILLIEGS*

>peptide 3 (70 aa)
MYVSTYIRISIYNLIYSSIFRLDCKNSIQISNSYIRIHMHLSIYHLFTWITMDNSSFICVRSYVVLPPLN*

>peptide 4 (34 aa)
MNTQLLANHQVFSYLMFLQLLFCLQMLRRHWVRQ*

Sequence

>CNT3058960
CTGATTGACCGAATATCTCTCATAAGGAATCGAAAGAAGATACGACGATTTCTTCCAGGAAATCCCCAACGAAAAATACACACTATTCCTTCTTTTCTAT
CAAATCTATCATAACCACTACCTACATTCCACAGAATTGTGCACCACAAATAGGAGCTAATGAACAGACCTGCGATACCATAGAAAGACATCACAATCCC
TTGTGGAAAAAAAAGGATTTGCTGAGACGGAAATAAGGATATCAGATTCCTGCCAAGATAACTGGAAGTTCCAACTAATAAGAACCCTAGTGAACCTAAA
AAAAGTATACAGGCCCAACATAAATTACTTGTTTTTCGAGAACCTGTTATAAGTTCTATCCATATACGTTCTGATCGCCAGTTCATACTAGATCCAGTTG
CATCCTATTGAAATTGAGAAAATGACCAAAATTTATTTTACTCTTTTGGCTCCCGAAGTAACTCTCATCAACTAGCACTATCATGAGTGAACTATCAGGA
ACAACTCATCGAATAAGTTAGGTATCAATAAACCTTCCTTCATATGATCCCATTATGTATGTTTATATATGTATGTATCTACATATATAAGAATCTCTAT
TTATAATCTAATCTATAGTTCTATATTTCGATTAGATTGCAAAAATTCGATCCAAATTTCAAACAGCTATATCCGCATACACATGCATTTATCCATATAT
CATCTATTTACATGGATAACAATGGATAACAGCTCTTTTATTTGCGTCCGGAGCTATGTTGTCCTCCCCCCACTAAACTAAATAGCTATCTTATCTGTAT
TACAATCTAATGATTGAAATAAATTGATGAGATTTGGTCCCTAGACAATCTTGTTTTTTTGAACATGAAGAAATAAAGAAGCCATTGCAATTGCCGGAAA
GAACAGGCCTATTAAAGGCACAAAAATAGAGGGTAAGTTGAAATCTGTCATAAAACGGGTGCCTCGATTTAATATTTTATTTGGAATTCTTCTCTAAAGA
AAGAAAAGAAAGGATAAGTAAAGAACTATTATTATTATCTATATATTAAGTATATTATAAATACAAGGTACAAGGAATGTAGAATTGAAATGAATTCAAA
AAAAGGTGTACCTATTTCTTTTATTTTCTTTTTTCTCCACGAAATATATGTATGAGAATTTTATTGTTCCCCCGTCCCTATGTTTCTAAAGTTTCTCACG
AGTTCTCAAAGGATTCGTTAGAACTCGATCCAAGAGGGATTCATACTAAGAAAGGGTTCTGGTACTCCGGGAGATATATAAATATGCAAGACTCCTACTC
CTATATTAGAATTAGAATTAGAATGAGTCTATTAGAATATTTGATACATAACAAGAACATGAAATCTTTTTTTTCTCTAATTTCAATTTTGCGGAACGAA
AATCTTATCCTGTTGATAGAGGGTTCCTGATTACTAGTCAGGAATAAAGGTAGAATAATAGATCTATCTGATTCGTACTACAATTAGAAATTAGAACTTA
TGTCAGGAAAGAAAACTCCTTTTTTGTTACTTCGATTCCGATCAGCTAAATACTTTTTGGCTCCAAATAACTGAACTTAGCGCTTTACTTTATTTGATTT
AAGGGGATGGAAAGTAGAAGAAAAGAAACCGTGGAGCTGAAATAACTCACTTGGAACACCTTTTAAAGGATTACGTGGTACGATTGAATCGAATAAGCCC
TTATGGAATGAATACTCAGCTACTTGCAAACCATCAGGTATTTTCTTATTTAATGTTTCTTCAATTACTCTTTTGCCTGCAAATGCTACGTAGGCATTGG
GTTCGGCAATAATGATATCTCCCAACATACCGAAACTCGCAGTCACTCCACCGGTTGTAGGAGATGTAAGGATTGATACATAGAATAACTTTTTATTGGA
TTGATAATTATATGAAGCGGAAGATATTTTAGCCATTTGCATCAAGCTCAAACCTCCTTCTTGCATGCGTGCTCCTCCAGAAGCACACACAATAACAACT
GGGAGAGATCTATCAATAGCATACTCGATCAAACGAG