Detailed information on CNT30188029


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674859Secale cerealeSetaria viridis25.6545.6297.18177forward
CNT30522718Secale cerealeSetaria italica30.5828.6395.73211forward
CNT30224983Secale cerealeHordeum vulgare79.1389.5191.21546forward
CNT30393906Secale cerealeTriticum turgidum71.0168.1596.33490forward
CNT30250314Secale cerealeAvena sativa59.4262.8890410forward
CNT30664919Secale cerealeTriticum dicoccoides71.0166.4994.49490forward
CNT30721767Secale cerealeTriticum spelta69.2863.6596.23478forward

Expression of CNT30188029

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 2 (56 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGGR

Sequence

>CNT30188029
TAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCATCTCGACTCGCCCTCACATGCAACATCTATCAGT
CCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCATGCCCGCGCGTGCACGCACGCGCTAGAGCTAGA
GAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGG
CCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCC
TCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCT
TGCCCGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCAT
GGTCGCGGCCGCCATTGCGCGCTGCGGACTCGCTAGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCGTTG