CANTATAdb - search

Detailed information on CNT30673332

BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 5e-141

BLAST vs NONCODE:
NONBNAT001751, E-value = 6e-155

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30194937	Setaria viridis	Pisum sativum	51.44	42.94	89.51	429	forward
CNT30712097	Setaria viridis	Glycine max	51.08	35.71	85.92	426	forward
CNT30647369	Setaria viridis	Rosa chinensis	50.12	46.14	83.49	418	forward
CNT30101006	Setaria viridis	Oryza rufipogon	47.84	57.33	92.73	399	forward
CNT30116376	Setaria viridis	Oryza nivara	29.62	45.49	92.71	247	forward

Expression of CNT30673332

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSRTGA*

>peptide 2 (58 aa)
MVHLNRLHLSSQASWTKGDKHTRLDDTGLNTANRDGSNTTDLVHILKGKTQGLRLPGPG

>peptide 3 (96 aa)
MMMTWEVKLAASLAGSSLELEATKPRLRSLTATFFTLKPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

Sequence

>CNT30673332
AATCCAAATATAAAAACTGTATGTAAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAA
AACTTAAGTGATATTATAGCATCTAGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGG
CGCCCGTTGGGTCCTTCTTCTCCACGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGA
GAAGGTCTCCACCACCATGGGCTTGGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGAT
CGTCTGTCGATCTTGGTAATGAGCTCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGGACTGGGGCGTAACCATTGCCGATCTGGCCAGGGT
GGTTCATGATGATGACCTGGGAGGTGAAGCTGGCAGCTTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACAAAACCACGCTTGAGATCCTTAACAGC
AACGTTCTTCACGTTGAAGCCAACGTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCATGGTGCATCTCAACAGACTTCACCTCAGTAGTCAGGCCAGTT
GGACCAAAGGTGACAAGCATACCAGGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCGATCTTGTACACATCCTGAAGGG
GAAGACGCAGGGGCTTAGGCTGCCTGGACCTGGT