Detailed information on CNT30116376


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 3e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692364Oryza nivaraOryza sativa88.7742.8198.34482forward
CNT30673332Oryza nivaraSetaria viridis45.4929.6292.71247forward
CNT30520996Oryza nivaraSetaria italica45.4919.8292.71247forward
CNT30618428Oryza nivaraSesamum indicum26.729.4189.66145forward
CNT30194937Oryza nivaraPisum sativum46.2225.1387.65251forward
CNT30503993Oryza nivaraNicotiana attenuata23.3946.1890.55127forward
CNT30712080Oryza nivaraGlycine max46.2234.6785.66251forward
CNT30160118Oryza nivaraPistacia vera46.4126.7287.7252forward
CNT30121467Oryza nivaraPhyscomitrium patens44.3836.3584.23241forward
CNT30224163Oryza nivaraHordeum vulgare45.4936.8187.85247forward
CNT30385905Oryza nivaraTriticum turgidum46.4146.4186.11252forward
CNT30588719Oryza nivaraMusa acuminata37.7548.1286.34205forward
CNT30146334Oryza nivaraMedicago truncatula46.2225.2586.85251forward
CNT30614218Oryza nivaraArabis alpina43.2840.5986.38235forward
CNT3067135Oryza nivaraLeersia perrieri50.0959.2683.09272forward
CNT30369885Oryza nivaraOryza glumipatula62.4378.2987.02339forward
CNT30427061Oryza nivaraPapaver somniferum45.8636.4687.15249forward
CNT3052982Oryza nivaraAmborella trichopoda41.4417.286.22225forward
CNT30148140Oryza nivaraBrachypodium distachyon30.5743.6892.77166forward
CNT30496615Oryza nivaraDigitaria exilis45.4927.2393.52247forward
CNT30603788Oryza nivaraOryza punctata94.4843.5595.71513forward

Expression of CNT30116376

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIILTIPASPFFKNLGSFSSSLPDRLSILDSSLNTTHRH

>peptide 2 (46 aa)
NSTNENNDTGSSNVNTRIPKQPMDNNRTQSISFNRTEINESIKRLT*

Sequence

>CNT30116376
AATAGCACAAACGAAAATAACGACACAGGAAGTAGCAATGTAAATACTCGCATTCCAAAACAGCCGATGGACAATAATCGGACTCAGAGCATCAGTTTTA
ACCGAACAGAAATAAACGAGAGTATTAAACGACTGACATAGTGCACATTGCGAGCAGATATTAACGGTCCATGAAACGAGAGCCATGGCCGTGGGCAAAA
CTTAACAAATACTAGAACTAGATATCTCAACTGCAGACATGCAAACCACCATTTGAACGAGGCTCACTTCTTCTTGGCGGCAGCCTTGGTCACCTTGGCA
CCGGTTGGGTCCTTCTTCTCCACGTTCTTGATGACGCCAACAGCCACCGTTTGCCTCATGTCACGCACCGCAAAACGACCAAGAGGAGGGTACTCAGAGA
AGGTCTCCACAACCATGGGCTTGGTAGGAATCATCTTGACCATACCAGCATCACCGTTCTTCAAGAACTTGGGCTCCTTCTCCAGCTCCTTGCCAGATCG
TCTGTCAATCTTGGACTCCAGTCTCAACACGACCCACAGGCAC