Detailed information on CNT3067194


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522474Leersia perrieriSetaria italica22.727.1884.73131forward
CNT30308206Leersia perrieriTriticum aestivum38.6537.0485.65223forward
CNT30392194Leersia perrieriTriticum turgidum14.0421.0985.1981forward
CNT30589645Leersia perrieriMusa acuminata20.121.485.34116forward
CNT30593752Leersia perrieriEragrostis curvula23.411.384.44135forward

Expression of CNT3067194

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MPRMSAWMAVQTQMAASRSTRPLSRGQHCSLSGTPMLSFSRLITPAHTLRSSPLMGHCPPP

>peptide 2 (39 aa)
MDQQPTSTSLHMEYTIKHVQYCLDMFRLVRVEGIIRAGR*

Sequence

>CNT3067194
GCTATATATATTTCGGGCTGTAGAAACGTAGAAGCTATATCGATGGAAAGATATTTGCAAGCCATGATCACACATTATTAATATTCACAGCTGCTGGAAG
TGGAAGCTAGGTCGAGTAGTTAACACAGGTGGAATAAACTTTTATTGACGACGTATGTATACAAATAACAAGATACAGAGATCGAGTTGATCAATATATC
ACTGATGGATCAACAGCCGACGTCGACATCGTTACATATGGAGTATACGATAAAACATGTACAGTACTGCTTGGATATGTTCAGGCTGGTACGTGTGGAG
GGAATAATCAGAGCGGGCAGGTGAAGTCGGAGGGGCACTTTTTGCCGCAGAAGTTGAGGAGGAGGGTGAGGTCGACGGGGACATTGAGGTCGATGCCGAG
GATGTCGGCCTGGATGGCGGTGCAGACGCAGATGGCGGCGTCGAGGTCGACGAGGCCACTCAGCAGAGGGCAGCACTGCTCGTTGTCGGGCACCCCAATG
CTGAGCTTCAGCAGGCTCATCACGCCGGCGCACACGCTCAGGTCGAGCCCGTTGATGGGGCACTGCCCACCACCACC