Detailed information on CNT30671166


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 3e-49

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30287289Setaria viridisTriticum aestivum58.65092.77235forward
CNT30386360Setaria viridisTriticum turgidum58.8548.7692.8236forward
CNT30252634Setaria viridisAvena sativa59.146.5694.51237forward
CNT30495775Setaria viridisDigitaria exilis71.0753.5790.88285forward
CNT30592819Setaria viridisEragrostis curvula57.8639.6692.67232forward

Expression of CNT30671166

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVMVLPVRVLTKICI

>peptide 2 (39 aa)
MIDGLTDHHGGGAPGGGCSPSGCCSQPGCAHPQAACRQR*

>peptide 3 (79 aa)
MGLLTTTEAEHQVEGALLLDVVVSQGAPILKLLAGKDEPLLVRGNAFLVLDLGLDVVNGVRRLHLEGDGLAGEGLDKDLH

>peptide 4 (56 aa)
QIQPVHKTNHKTRQKNIKDKLQFMTKHNPDTGTSKETQAETRRPRYSRSFHDRWAY*

Sequence

>CNT30671166
ACAGATACAGCCAGTTCATAAGACCAATCATAAGACCAGACAAAAGAACATCAAAGACAAACTGCAGTTCATGACCAAACACAATCCCGACACAGGTACT
TCAAAGGAGACACAGGCAGAGACCAGACGACCCAGGTACAGTAGAAGCTTCCATGATCGATGGGCTTACTGACCACCACGGAGGCGGAGCACCAGGTGGA
GGGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGAATGCCTTC
CTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATC
T