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Detailed information on CNT30386360


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 7e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671166Triticum turgidumSetaria viridis48.7658.8592.8236forward
CNT30287289Triticum turgidumTriticum aestivum97.11100100470forward
CNT30256779Triticum turgidumAvena sativa48.7613.7295.76236forward

Expression of CNT30386360

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MKRTQRTTKHKPAGPTPGQLLTTTEAEHKVEGGLLLDVVVSKGAAILQLLASKDKALLVRGNALLVLDLGLDVVDGVGALNLEGDGLAGEGLHKDLH

>peptide 2 (35 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICI

>peptide 3 (29 aa)
NEIREGIVRSLPNKQLKHKIYPKVHLFIT*

Sequence

>CNT30386360
TAAATGAAATCAGAGAAGGAATAGTAAGATCATTGCCAAACAAGCAACTCAAGCACAAGATTTACCCGAAAGTTCATTTATTCATTACTTAGATGTTACT
GTACCAGCAACTTCGTAAACCAAACACGTAACAGTGACTCGATAGTTCATTAAACCAACATAGGACTGATGCGAACAATGAAACAGTTCAAATGAAACGG
ACACAACGAACGACCAAGCATAAACCAGCAGGTCCAACGCCAGGGCAATTACTGACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGG
ATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGG
CCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCT