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Detailed information on CNT30287289


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 6e-49

BLAST vs NONCODE:
NONSTUT000620, E-value = 1e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671166Triticum aestivumSetaria viridis5058.692.77235forward
CNT30386360Triticum aestivumTriticum turgidum10097.11100470forward
CNT30256779Triticum aestivumAvena sativa5013.6695.74235forward
CNT30681463Triticum aestivumTriticum urartu94.6810098.65445forward

Expression of CNT30287289

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RRNSKIIAKQATQAQDLPESSFIHYLDVTVPATS*

>peptide 2 (35 aa)
MPSLSWILALTLSMVSELSTSRVMVLPVRVFTKICI

>peptide 3 (96 aa)
MKRTQRTTKHKPAGPTPGQLLTTTEAEHKVEGGLLLDVVVSKGAAILQLLASKDKALLVRGNALLVLDLGLDVVDGVGALNLEGDGLAGEGLHKDLH

Sequence

>CNT30287289
AGAAGGAATAGTAAGATCATTGCCAAACAAGCAACTCAAGCACAAGATTTACCCGAAAGTTCATTTATTCATTACTTAGATGTTACTGTACCAGCAACTT
CGTAAACCAAACACGTAACAGTGACTCGATAGTTCATTAAACCAACATAGGACTGATGCGAACAATGAAACAGTTCAAATGAAACGGACACAACGAACGA
CCAAGCATAAACCAGCAGGTCCAACGCCAGGGCAATTACTGACCACCACGGAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG
CAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTC
GATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC