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Detailed information on CNT30251599

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3044110	Avena sativa	Prunus dulcis	11.32	24.91	87.67	73	reverse complement
CNT30394909	Avena sativa	Triticum turgidum	12.4	21.51	88.75	80	forward
CNT30650833	Avena sativa	Rosa chinensis	11.32	24.09	91.78	73	reverse complement

Expression of CNT30251599

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MISQRSHSRSMILNCQELDGTFQKVDLRSLGLMERLEEGKKPTAIGEVARELELDLVY*

>peptide 2 (32 aa)
MLSPRLNMFCSRLTATLTSQKVQDRLQQPQLL*

Sequence

>CNT30251599
GGATTGTTCAACATGTTTGGCTTTGTACTTGGCAGGTAGAAGCATGGTGATTTATAGCTAGCTGCAATTGTAGAAAATTTAAAGAACATTCTTAATTTTT
GTTGGTACTTGAAATACGATGGATGGTTGAGCTAAGACCTAGTGTGTGATGTTTGTTCTGTACCAGTTAGGGCTGAAATTAACGAATCTGGAAGTGCTTT
AGCGATTGATGCTCTCTCCCAGGTTAAACATGTTCTGCTCCCGACTGACCGCAACCCTTACCTCTCAGAAGGTACAAGACAGGCTGCAGCAACCACAACT
ACTCTAGCAAAGAAGTATGGTGCAAACATTACAGTAGTTGTCATTGATGATAAGCCAAAGGAGTCATTCCCGGAGCATGATACTCAATTGTCAAGAATTA
GATGGCACCTTTCAGAAGGTGGATTTACGGAGTTTGGGGTTGATGGAGCGCCTTGAAGAAGGAAAGAAGCCGACAGCTATCGGAGAAGTCGCACGTGAGT
TGGAGCTAGACCTAGTGTACTAAGAAGGAATATAATGTGGAGATGCGGGGTATCGATCCCTGTGCCTCTCGCATGCTAAGCGAGCGCTCTACCATCTAAG
CTACATCCCCTTGTTTTATTAACTAATAAATGGGTCTATATGTCT