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Detailed information on CNT30632133


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ80|PLT5_ARATH, E-value = 3e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071378Vigna unguiculataQuercus suber11.5922.9288.7580forward
CNT30526724Vigna unguiculataPhaseolus vulgaris25.2221.5186.78174forward
CNT3043231Vigna unguiculataPrunus dulcis23.6219.1185.28163forward
CNT30559342Vigna unguiculataActinidia chinensis22.1720.5684.97153forward
CNT30555855Vigna unguiculataOryza glaberrima24.6429.5180.59170forward
CNT30705241Vigna unguiculataPrunus avium31.0119.0682.71214forward
CNT30120990Vigna unguiculataCitrus clementina23.6224.1183.44163forward
CNT30576940Vigna unguiculataOryza barthii24.6420.1780.59170forward
CNT30116150Vigna unguiculataOryza nivara25.0727.5581.5173forward

Expression of CNT30632133

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MIPKSISIFTSDTFRSLFMYMAAPLITPISVTITA*

>peptide 2 (78 aa)
IGEGSEEATIGGWGDLGGVDGADHEGVADADSGDETAEHEKRIVGGETHENCSGEEDGAGEDNGVSAAYPVGGSAGQA*

>peptide 3 (35 aa)
MRIAPAKKMVPAKTMVYRRPIQSEVLPAKHEPMRE*

Sequence

>CNT30632133
CATCGGTGAAGGAAGTGAGGAAGCCACGATAGGAGGCTGGGGAGACCTCGGCGGAGTAGACGGGGCCGATCATGAGGGCGTAGCCGATGCCGATTCCGGC
GACGAAACGGCCGAACATGAGAAACGCATAGTTGGGGGAGAAACCCATGAGAATTGCTCCGGCGAAGAAGATGGTGCCGGCGAAGACAATGGTGTATCGG
CGGCCTATCCAGTCGGAGGTTCTGCCGGCCAAGCATGAGCCTATGAGAGAGTAGAGGTTGATGATTCCCAAGAGTATCTCTATTTTCACATCCGACACCT
TTAGGTCCCTCTTTATGTATATGGCTGCACCACTCATCACTCCGATATCTGTAACAATAACAGCATAGTCATTCATCGTAACTACAGCATTTACAAATTT
CCAATTTTTTTGTATTGGGAGATTCCCTTTTGTTAAAGAATCTCGCAAAATCTCTCCCACCAAACTGTATTTGTTTTCTCAGCAAAAGTCTTCTTCCTTT
TTCACTTTTCCCACTTAACTGGATAAGTTTTACAGTACAATTATAGTGTCGGCACACGTTACACCCGGTTTCCCTCCGAACAAACTATATTAATTTCTCC
GATACAGTTAACAATTTGATGTTTCAGATGTGTTTGATAATAGAGAAAATAAGACTCACCATAGCCAAGTAAAATGGATGTCATGGAGGC