Detailed information on CNT30555855


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XIH7|PLT1_ARATH, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521812Oryza glaberrimaSetaria italica28.325.0887.12163forward
CNT30632133Oryza glaberrimaVigna unguiculata29.5124.6480.59170forward
CNT3043231Oryza glaberrimaPrunus dulcis35.2423.882.27203forward
CNT30559342Oryza glaberrimaActinidia chinensis39.0630.2484225forward
CNT30363075Oryza glaberrimaSorghum bicolor24.6524.0383.1142forward
CNT30370787Oryza glaberrimaOryza glumipatula26.2222.47100151forward
CNT30120990Oryza glaberrimaCitrus clementina25.8722.0480.54149forward
CNT30576940Oryza glaberrimaOryza barthii82.8156.58100477forward
CNT30116150Oryza glaberrimaOryza nivara51.5647.2986.2297forward

Expression of CNT30555855

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MRNAPAKNMTAANTMVYRRPIQSDVRPAAKEPMSE*

>peptide 2 (38 aa)
MLRPMAQGILASGCWPTTVSPAPSMMRHPRFSGKREKA*

>peptide 3 (33 aa)
MPKLMNTSGNDVRKPRADAGDTSAVYTGAIMSA*

Sequence

>CNT30555855
GGAAGATCTCCGAGCTGTACACCCACGTGATGGGGCCAAGGCCGATGGAGAAGAAGGCGACGTAGGCGAGGGTGGAGGCGATGCTTAGGCCGATGGCCCA
AGGTATCTTGGCGTCGGGGTGCTGGCCGACGACGGTGAGCCCGGCGCCGAGCATGATGCGCCACCCGAGGTTCAGCGGCAAGCGGGAGAAAGCATAGTTC
GAGACGTACCCGAGCAGGATGCCGAAGTTGATGAACACCTCCGGGAACGACGTCAGGAAGCCACGCGCCGACGCCGGCGACACCTCGGCGGTGTACACCG
GCGCGATCATGAGCGCGTAGCCCACGCCGATGCCGGCCACGAAGCGGCCGAACATGAGCATGGCGTAGTTGACGGCGAACCCCATGAGGAACGCCCCCGC
GAAGAATATGACGGCGGCGAACACGATGGTGTACCGCCGGCCGATCCAGTCCGACGTCCGCCCCGCCGCGAAGGAGCCGATGAGCGAGTAGAGGTTCAGT
ATGCCCATGAGAACCTCCACCTTCCCGTCACTGATGTTGAAGTCCTTCTTGATGTACAGCGACGCCCCGCTCATCA