Detailed information on CNT30116150


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ80|PLT5_ARATH, E-value = 5e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521812Oryza nivaraSetaria italica38.6937.3891.77243forward
CNT30632133Oryza nivaraVigna unguiculata27.5525.0781.5173forward
CNT3043231Oryza nivaraPrunus dulcis24.217.8283.55152forward
CNT30559342Oryza nivaraActinidia chinensis36.3130.6583.77228forward
CNT30555855Oryza nivaraOryza glaberrima47.2951.5686.2297forward
CNT30120990Oryza nivaraCitrus clementina30.2528.1181.58190forward

Expression of CNT30116150

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PLPVRPYSRGRWRPRPRHRTRPRGCRRLS*

>peptide 2 (33 aa)
MPLLLNTSGNEVRKPRADVGATSAVYTGAIMSA*

>peptide 3 (35 aa)
MRSAPVKKMAAASTMVYRRPSQSDVMPAASEPNSE*

>peptide 4 (90 aa)
SPCEALFARTMATTSSPSDASSGMPTAFLMSRSRSSASSGESEVLRSTRRASSMRPRMTSHRGDSGMARTAMPRKMGGTAPTRNMAKLET*

Sequence

>CNT30116150
CCTCTCCCTGTGAGGCCTTATTCGCGCGGACGATGGCGACCACGTCCTCGCCATCGGACGCGTCCTCGGGGATGCCGACGGCTTTCTTGATGTCGAGGAG
CCGGTCCTCGGCCTCGTCGGGCGAGTCGGAGGTCTTGAGGAGCACGCGGCGCGCGTCCTCGATGCGGCCCCGCATGACGAGCCACCGGGGCGACTCCGGC
ATGGCGAGGACGGCGATGCCGAGGAAGATGGGCGGCACGGCGCCGACGAGGAACATGGCGAAGTTGGAGACGTAGCCGAGGAGGATGCCGCTGTTGTTGA
ACACCTCCGGGAACGAGGTGAGGAAGCCGCGCGCCGACGTCGGCGCCACCTCGGCGGTGTACACGGGCGCGATCATGAGCGCGTAGCCGACGCCGATGCC
GGCCACGAAGCGGCCGGCCATGAGGAACGCGTAGTTCGGGGCGAGGCCCATGAGGAGCGCGCCCGTGAAGAAGATGGCGGCGGCGAGCACCATGGTGTAC
CGCCGGCCCAGCCAGTCGGACGTCATGCCCGCCGCCAGCGAGCCGAACAGCGAGTAGATGTTGATGACGCCGGCGAGGATCTCGATCTGCGTGTCGGTGA
TCTTCAAATCCTCCTTCATGAATATCTG