Detailed information on CNT30611796


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376000Arabis alpinaArabidopsis thaliana20.424.3391.2191forward
CNT30538793Arabis alpinaBrassica napus21.5224.8791.6796forward
CNT3078393Arabis alpinaBrassica juncea22.4222.8889100forward
CNT30260384Arabis alpinaBrassica rapa21.528.6291.6796forward
CNT30126894Arabis alpinaCorymbia citriodora17.2621.3392.2177forward
CNT30619768Arabis alpinaCajanus cajan17.4931.293.5978forward
CNT30725207Arabis alpinaLupinus angustifolius17.4921.6793.5978forward
CNT30115234Arabis alpinaEutrema salsugineum22.872592.16102forward

Expression of CNT30611796

Peptides detected in this lncRNA

>peptide 1 (36 aa)
SPCTSTYLSLHGPKCVRIGPITVYGLYQMLRRNSKP*

Sequence

>CNT30611796
TCTCCCTGTACATCAACGTACTTATCCTTACATGGGCCTAAATGTGTTAGAATAGGCCCAATTACAGTATATGGGCTTTATCAAATGTTAAGGAGAAACA
GCAAACCCTAACTATAAATTGAGTGGAGTGAAAAGATTAGTGTACAGAGCCAGAATCTGAGTACGGCGATTTCACGATGAGAGCAAAGTGGAAGAAGAAG
CGCATGAGGAGACTTAAGAGGAAACGTCGAAAGATGAGACAGAGATCCAAGTAGACTTTACTTATCACAAATCTCTGTAATAATACTACATTTCTAGTTT
CTTTGAGTGTTTTTTAAGCATCAAATTTCGAACCTTTTGTGTGGGTTTTTACTTTGAGTACTTGTGTAGAACTTGGTTTATTATACTATGAAGCAGAGGT
TTGTTTCCAATATGTTATGTTGGTTTGGTAATTATAGTGATCAAAG