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Detailed information on CNT30607892


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616300Gossypium raimondiiSesamum indicum27.5819.9979.58289forward
CNT30728471Gossypium raimondiiCorchorus capsularis31.9722.1687.16335forward
CNT30379202Gossypium raimondiiManihot esculenta30.8225.3979.26323forward
CNT30588133Gossypium raimondiiMusa acuminata17.3722.6180.77182forward
CNT30173347Gossypium raimondiiTrifolium pratense13.6520.1481.82143forward
CNT30313432Gossypium raimondiiCamelina sativa12.3158.3780.62129forward
CNT30706621Gossypium raimondiiPrunus avium9.1621.1586.4696forward
CNT3050712Gossypium raimondiiCucumis sativus5.7328.9991.6760forward

Expression of CNT30607892

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MFITLVFITSTGFDATAATNPAEKLAATCVPSPSFISPFSKIISLI*

Sequence

>CNT30607892
TGTTTGTTTGCTGAAAAGGTAATAGTGATTAATGAGTTGGACAGCAATAGCATTATTACCCCAAATCAAAATTGAGGTGGATTTGCAGCGACTAATTTAC
TTACAGTAATTTTAGAGCAAATATCTCATCTATTGATATCATTATTAGAACAAGAATCACACATCGCGTTTAACATGTAGAACAACATAAAACTGGAAAA
CAATTAAGTAACTTAAACATTCATTTTCGTCATCGTCTTTGTTATCAATGCCTTAAAAGTCCTTAAGCAACTTCCGGACCTGTTCCAGCGTCACAAACAG
CACCACCGTAAATGGTCCCTGTCTCGAGATTGTGGGTATAAACCCTTTATACAAAGCCATCGGCCCTTCCGCCTTCACCGTCTTGATAGCACAATCCAAA
GCGCCGGCGTACGGCGGCTTTTGCCCTGCCTCCACCTTCATGTTCATCACCCTTGTTTTTATCACATCAACGGGATTCGACGCCACTGCCGCAACAAACC
CGGCTGAAAAGCTCGCTGCCACGTGTGTCCCCAGCCCATCTTTCATCAGCCCGTTTTCCAAAATCATCTCTTTGATCTGATCGTAGGAGCGATGAGCCGC
GCCACAAGGAGGTGACGCCTTCTTGTTTGGTCATGCGAGTGATGGCGTCGACAACGCTGGTATAGTTACGACGTTGAGATACGGGGAGGCGTCCGTCAGC
TTGCATTCGCACCATCGCCACGTCGGCTGGGTTCCCAACGGCAGCGCCGATCCCCCCGGCGATTAGCCCGGCGGTGATTTTCCGCGAGAGAGGCATTGTT
TTGGTCTCTTTATCAGTCCACTTCTGTTTTAGGATGTCGTAGAGTCCCATGCGGGTGGTGGAATAGAGGGTCTGGCGGAGGACGGTAGCAGAGACGCCAG
AAAAAAGAGCAGCGACGCCTTCGGTCCGGAAGATCTTGATCCCGGTGGCCACAGGTCCAACACGCACCGGCGGAGGAGGCATGTGGATAGCAGAGGAGGT
GGTAGTAGTGGTTGTCTGAAAGGCTAAAGCAGGGCGGAGTGTTTGAAC