Detailed information on CNT30706621


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY68|PUMP6_ARATH, E-value = 8e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30160456Prunus aviumPistacia vera25.119.7482.46114forward
CNT30607892Prunus aviumGossypium raimondii21.159.1686.4696forward
CNT30654380Prunus aviumRosa chinensis22.698.5888.35103forward

Expression of CNT30706621

Peptides detected in this lncRNA

>peptide 1 (49 aa)
PLEDVVEAHAGGGVEGLAEDGGGDPGEQRCNAFGLGNAESKGDRPHSGW*

>peptide 2 (33 aa)
MKEEFSSSNFRREREREREREREREIVLLGCSVF

>peptide 3 (33 aa)
MRTLMRSSGCVEAPAMMEAMPPSTKPFTPILRL*

>peptide 4 (91 aa)
MVAETPENSAATPSVWAMRSPRETGPTRGGEGEGRAETRLHCRVGEVGFALKLDADFDEVKWVRGSSGYDGSYAAFNEAFYTHFAIIMNYT*

Sequence

>CNT30706621
TTCCGCTTGAGGATGTCGTAGAGGCCCATGCGGGTGGTGGAGTAGAGGGTTTGGCGGAGGATGGTGGCGGAGACCCCGGAGAACAGCGCTGCAACGCCTT
CGGTCTGGGCAATGCGGAGTCCAAGGGAGACAGGCCCCACTCGGGGTGGTGAAGGCGAGGGCCGGGCGGAAACCAGGCTGCATTGCAGGGTTGGGGAGGT
GGGATTCGCCTTGAAGTTGGATGCGGACTTTGATGAGGTCAAGTGGGTGCGTGGAAGCTCCGGCTATGATGGAAGCTATGCCGCCTTCAACGAAGCCTTT
TACACCCATTTTGCGATTATAATGAATTACACTTAGAAAAATGAAGATGAAATGAAAGAAGAGTTTTCAAGTTCCAACTTCAGGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGATTGTGTTGTTGGGTTGCAGTGTGTTTT