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Detailed information on CNT30379202


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 1e-144

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616300Manihot esculentaSesamum indicum44.8939.4978.11571forward
CNT30728471Manihot esculentaCorchorus capsularis30.8225.9378.06392forward
CNT30160456Manihot esculentaPistacia vera19.2620.9480.82245forward
CNT30607892Manihot esculentaGossypium raimondii25.3930.8279.26323forward
CNT30726058Manihot esculentaLupinus angustifolius22.0928.1878.65281forward

Expression of CNT30379202

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MRTLMRSRGWVEAPATMEAIPPSTKPFKPIINYGSKTEEIKSDQRESS*

>peptide 2 (51 aa)
NGNVINTNLYIKKSILLYSNGIVAAFPNQRIKLFIILSVMKLKNSQLSSYM*

>peptide 3 (29 aa)
MDRKLKKSNQISERVAELSEEVENRNGDED

>peptide 4 (41 aa)
MIRTPIEMGPTRAGGGAISTGSEILPAPAATVLKAIAGRRA*

>peptide 5 (46 aa)
MFITLVFITSIGFEATDATNPAAKLAVTWVPIPSLITPFSNIISLI*

Sequence

>CNT30379202
TAAATGGAAATGTGATCAATACGAATTTATATATCAAAAAATCAATTCTTCTTTACAGTAATGGAATAGTAGCGGCCTTTCCTAACCAAAGAATTAAATT
ATTTATAATTCTCTCAGTAATGAAGCTGAAAAATTCACAGCTTTCTAGCTATATGTAATGGCATTTGATTTTCCTCATCGATCATCATCACATGAATTAG
AAATCTTTGAGCAGCTTCCTGACCTGCTCTAGCGTGACAAACAGCACCACAGTGAAAGGTCCTTGCCTTGAGATTGTAGGGATAAATCCCTTATACAAAG
CCATTGGACCCTCCGCCCTCACTGTCTTCATTGCACAGTCTAATGCACCCTTGTATGGCGGCTCCGCCCCTGTCTCCACCTTCATGTTCATAACCCTAGT
CTTTATCACATCTATAGGGTTTGAAGCCACCGATGCCACAAACCCAGCTGCGAAGCTCGCCGTCACATGGGTCCCTATTCCATCACTCATCACACCCTTC
TCCAATATCATCTCCTTGATCTGATCATAGGATGCGAGCTGTGATGCAGTGACGATCATCGCACGGTTCACTGTTAGACTTGAGCCACGCCAGAGGCTAG
CAATTCCTTCTTGCTTTGACATTTGAGTCAGAGCATCAAACACACTCTTGTAGTTGCGACGTTGGTCAATTGGGAGACGTCCATCAGCCTGCATTCGGAC
CATAGCCACGTCAGCGGGGTTCCCAACGTCGGCTCCGATACCGCCGGAGATAAGGCCGGCAAGAATCTTGCGTGGAAGAGGCATGGTTCCGGTGTCTTGA
TCTGTCCACTTGTGTTTAAGAACATCGTAAAGACCCATACGGGTGGTTGAGTACAAGGTCTGGCGAAGTATAGTGGCAGATACACCAGAGAAAAGGGCTG
CAGCACCTTCAGATTGAATGATACGAACACCGATAGAAATGGGTCCAACACGAGCAGGTGGAGGAGCAATTTCTACAGGTAGTGAAATATTGCCGGCACC
TGCAGCAACCGTGTTGAAGGCGATTGCAGGACGGAGGGCTTGAAGGGAAGCTGGATTGGGGAGGTGGGATTCACCTTGAAGTTGCATGCGAACCTTGATG
AGATCAAGAGGATGGGTGGAGGCACCAGCGACGATGGAGGCAATACCACCTTCAACAAAACCCTTCAAACCCATTATTAATTATGGATCGAAAACTGAAG
AAATCAAATCAGATCAGCGAGAGAGTAGCTGAGTTAAGTGAAGAGGTGGAGAACAGAAATGGTGATGAAGAT