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Detailed information on CNT30616300


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 1e-118

BLAST vs NONCODE:
NONSLYT003295, E-value = 3e-72

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546427Sesamum indicumIpomoea triloba18.8863.1983.88273forward
CNT30728471Sesamum indicumCorchorus capsularis48.4146.377.57700forward
CNT30379202Sesamum indicumManihot esculenta39.4944.8978.11571forward
CNT30488443Sesamum indicumOlea europaea21.0939.1579.67305forward
CNT30160456Sesamum indicumPistacia vera37.6946.5881.65545forward
CNT3097992Sesamum indicumSolanum tuberosum17.4356.1280.95252forward
CNT30568460Sesamum indicumActinidia chinensis33.9657.6383.71491forward
CNT30588133Sesamum indicumMusa acuminata13.4224.184.54194forward
CNT30238141Sesamum indicumBrassica oleracea7.6120.6883.64110forward
CNT30511436Sesamum indicumSolanum lycopersicum24.2737.2280.34351forward
CNT30173347Sesamum indicumTrifolium pratense16.3233.2480.08236forward
CNT30142453Sesamum indicumLolium perenne5.7426.7785.5483forward
CNT30163Sesamum indicumZea mays6.0242.0387.3687forward
CNT30607892Sesamum indicumGossypium raimondii19.9927.5879.58289forward
CNT3067881Sesamum indicumLeersia perrieri6.0223.5188.5187forward
CNT30654380Sesamum indicumRosa chinensis18.1921.9282.51263forward
CNT30684412Sesamum indicumTriticum urartu7.0527.4282.35102reverse complement
CNT30724289Sesamum indicumLupinus angustifolius3.625.8790.3852reverse complement
CNT3050712Sesamum indicumCucumis sativus6.8547.8385.8699forward

Expression of CNT30616300

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MARFTVRDEPRHRLVTPSFLVICEMASTTLL*

>peptide 2 (85 aa)
MIRIPTERGPTRGGGGGGGGRWMLWAAERLNGRRPLPLKLHPDLNQIQGVSTAAGNNGSNASFNKSLQTHFLRNSNRKEKIKINR*

>peptide 3 (30 aa)
MPPAMSPATIFLVRGMLLVFGSVHFFFRMS*

Sequence

>CNT30616300
TATAATTTTTAGCCATTATCGGAAGGTGGTCAGGGCTCAAAGTTACATAATTCTATAATTTTCTTGAATTAATATTAATATTTAGAACAATTCATTGATA
TTTTAAAAATAAAAAGACAACATGTGTAACACTAAAGATTATTATTACATTTAAACCTTGTGACATAATCATAATCTTTTTATGGGAAATTAATATTTGC
TAAAATAGTCGAAAAGATTTATGTGTTCTTAGTTTCCACCCCAATTCTTCGTCATCATCAGCTAGTTTCAGAAATCCTTGAGCAGCTTCCGGACCTGTTC
CAGTGTGACAAAGAGCACGACAGTGAATGGTCCTTGCCTCGAGATCGTCGGAATAAACCCTTTGTAAAGCGCCATTGGCCCCTCAGCATTGATCGTCTTC
ATCGCGCAGTCGAGGGCCCCGCTGTACGGCGGCGCCTTCCCCGCCTCCACCTTCATGTTCATCACGCGGGTCTTGATCACGTCCACCGGGTTCGACGCCA
CCGCCGCCACGAATCCGGCGGCGAAGCTCGCCGTCACGTGAGTCCCCAGCCCGTCCTTCATCAAGCCTTTCTCAAGTATCATTTCCTTGACCTGATCATA
CGATGCGAGCTGAGAAGCGGTGACGAGCATGGCGCGGTTCACCGTAAGGGATGAGCCGCGCCACAGGCTAGTCACGCCCTCGTTCTTGGTCATTTGCGAA
ATGGCGTCCACCACGCTCTTGTAGTTGCGCCGCTGGGCCACCGGGAGGCGGCCGTCGGCCTGCATCCGGACCATAGCAACATCGGCGGGGTTCCCTACGG
CGGCTCCGATGCCGCCGGCGATGAGTCCGGCGACAATCTTCCTCGTGAGAGGCATGTTGTTGGTTTTCGGATCGGTCCATTTCTTCTTCAGGATGTCGTA
GAGCCCCATCCTGGTGGTGGAGTAGAGGGTCTGGCGGAGGACAGTAGCAGAAACGCCGGAGAAGAGAGCTGCAGCGCCATCCTGCTGGATGATCCGGATC
CCAACAGAAAGAGGACCGACGCGGGGCGGCGGGGGAGGAGGAGGCGGAAGGTGGATGTTGTGGGCGGCGGAGAGGCTGAACGGCCGACGGCCCCTCCCCT
TGAAGCTGCATCCTGACCTTAATCAAATCCAGGGGGTGAGTACTGCAGCCGGCAACAATGGAAGCAATGCCTCCTTCAACAAATCCCTTCAAACCCATTT
TCTCAGAAACTCAAATCGAAAAGAGAAGATCAAAATAAACAGGTAAAATCAAAATCAAAATCCCTCTCTAAAATTAGGATCAAGAGGAAAAAGACCAGTT
GGAATTAGAGCTCATCTCACTGGAAACCAGGAGATGGGAGTGGAGGCCGAAGGCTATGGAGGAAAAGTGTGGAACGTTGGCCCTTTGAGACATATGCTGT
AGAAGAGGAGAGGAAATGGTGGGTGGGTCTGAAGAGGGTGGGGCGG