Detailed information on CNT30597073


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001400, E-value = 3e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554221Oryza meridionalisOryza glaberrima26.9233.2983.53249forward
CNT30370421Oryza meridionalisOryza glumipatula26.731.1583.4247forward
CNT30109874Oryza meridionalisOryza longistaminata44.5438.4391.5412reverse complement
CNT30103186Oryza meridionalisOryza rufipogon42.8120.7994.19396forward
CNT30577218Oryza meridionalisOryza barthii42.8121.3694.19396forward
CNT30604071Oryza meridionalisOryza punctata23.0393.0187.79213forward

Expression of CNT30597073

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVTLLEHHLLLLQVGLSAVSLQHLLAALVYMVRYVKILIDIWICYFPCFSWC*

>peptide 2 (35 aa)
SSPFLTLSQSQRRRFLGSAGDLPCSGCHTPLRRPV*

>peptide 3 (52 aa)
LLSFSHALPVPAPPLPRQRRRPPLLRLPHSTPATRLAVAGLNQFLGSSLLCP*

>peptide 4 (70 aa)
MVTLLEHHLLLLQXPLLQKPKSSLLLLLFWINGNSARTPLAPSSGWSLCCLTSASSCCFGLHGKICENLD*

>peptide 5 (54 aa)
MCAHPLLQKPKSSLLLLLFWINGNSARTPLAPSSGXPPSETQVFSSTAALLDQW*

Sequence

>CNT30597073
CTCCTCTCCTTTTCTCACGCTCTCCCAGTCCCAGCGCCGCCGCTTCCTAGGCAGCGCCGGCGACCTCCCCTGCTCCGGCTGCCACACTCCACTCCGGCGA
CCCGTCTAGCCGTCGCCGGCCTGAATCAGTTTCTTGGCTCCTCACTTCTCTGCCCCTAAGCTAACCCTAGCTTCTGGTCTCCTGCTGCTGCAGCCGCCGT
GGAGATGGCCGGTGGAAACACAAGCAACTCCGGTGGCTGCATCCCTCTCCTCCATAGGATCTACTCTCCTCCCCTATTGTAATTTTTGGTTACCTCTGAT
GATTCTACAGTGATTGAAAAATGTGTGCTCATCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTAG
AACACCACTTGCTCCTTCTTCAGGTNCCCCTCCTTCAGAAACCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCAATGGTAACTCTGCTAGAACACC
ACTTGCTCCTTCTTCAGGTTGGTCTCTCTGCTGTCTCACTTCAGCATCTTCTTGCTGCTTTGGTTTACATGGTAAGATATGTGAAAATCTTGATTGATAT
CTGGATCTGCTACTTCCCTTGCTTTTCCTGGTGTTGATCCTCTTGCTTGATTTCTGCTCCTTCTTGCTTGAGCTGCTACTGGTTGCTTCTCCTACTACTA
CTCTGACCTCTCATTCACTCACCCTAGCCTCTCCTGGCTGCACACACAAGGCTGCTACGGCTGTGGTGAAGCATGGGTGAGATGTTGAACTACTGATCTA
CTAGCTGTGATTATTTCTCTTTGGCTTGAGTTGAATCCCCAGCCGAACTACTGGTGGTGGCTGCTATTGCTAATGTTTTGGTTGTTGATGCTGCTGCTAC
TAATTTCTCCAAGCCTAGATAGCCA