Detailed information on CNT30554221


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005507, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692082Oryza glaberrimaOryza sativa37.310.1487.46279forward
CNT30597073Oryza glaberrimaOryza meridionalis33.2926.9283.53249forward
CNT30108006Oryza glaberrimaOryza longistaminata36.511.8292.31273forward
CNT30102325Oryza glaberrimaOryza rufipogon89.5794.599.7670forward
CNT30576806Oryza glaberrimaOryza barthii89.1710099.85667forward
CNT30115640Oryza glaberrimaOryza nivara53.3433.5699.5399forward

Expression of CNT30554221

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

>peptide 2 (44 aa)
TFFLFFFFFSFSSSPSRSTQRRCFPGSAVALPCACCHAPLRRPF*

>peptide 3 (54 aa)
HLLPLLFFFLVLFLSLTLHPAPLLPRQCRRSPLRLLPRPTPATLLAAAPQPSPA*

>peptide 4 (65 aa)
PSSSSFFFSRSLPLPHAPPSAAASQAVPSLSPAPAATPHSGDPSSRRPATVAGLNRFLGSSLLCP*

Sequence

>CNT30554221
CACCTTCTTCCTCTTCTTTTTTTTTTTCTCGTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCCGCTGCTTCCCAGGCAGTGCCGTCGCTCTCCCCTGC
GCCTGCTGCCACGCCCCACTCCGGCGACCCTTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGCTCCTCGCTTCTCTGCCCCTAA
GCTAATCCCAGCCACCGGTCTCTTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGCGCACGCAACTCCGGTGGCTGCATCCCTTTCCCCCA
TAGGAAGAATGCATGCTTGAATCCTGGGCGTGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAGAACCTTTACCTGAATTTGC
AAGTCGTGGGGGAGGTGGTTTTGGCGCTGTAAAAACTCCGGATGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAAAGAGATAGGCTCGGGTAGC
CTCTAAGATGGCTTCGCCCGCGGCGTGTGTGTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTGCAAGCATAGCAAACTGAAA
CAACTGGTTGACAGTTTTAAATTCCTTATTATCAACTATGTCCTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAATAGAATCTTCGGTTCCCTCC
ACCATTGCTACATCGCGTCAATCCCTTTTGTAGCTCACCATAGTAATC