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Detailed information on CNT30109874


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006824, E-value = 3e-105

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597073Oryza longistaminataOryza meridionalis38.4344.5491.5412reverse complement
CNT30103186Oryza longistaminataOryza rufipogon41.4223.3184.46444reverse complement
CNT30604071Oryza longistaminataOryza punctata19.9693.4582.24214reverse complement

Expression of CNT30109874

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MCCYKLQYCKRKFMCCYKLLFCNQNIQDTKLVAEPSPQIPRDCKFNIKAIEF*

Sequence

>CNT30109874
TATGATCACACAAATTAAATTTAGGAGGTTTGAAGTTTTTATAAAATAGGTAACAGAAAATTTATGTGTTGCTACAAGCTACAGTATTGCAAGAGAAAAT
TTATGTGTTGCTACAAGCTACTGTTTTGCAACCAAAATATTCAGGACACAAAACTAGTAGCTGAGCCATCTCCACAAATTCCCAGAGACTGTAAGTTTAA
TATAAAAGCCATTGAGTTCTAGGGCAATTATTAATTATTCCCTAAACTCAGGATATCCTCCAAATTTAGAGAACTTGAGGGACTCAAGTGCAAAAGTAAC
AAACATATCACACTCTACCAAATTTTCCATATTTGGGGAAATTGATAAATAGCCTTAGATTATCCCACTGAATAAGCACTTGTGAGATGTCAAGCTTAGG
AGCATCTGAACAAAAAATCAAGGGTGAATTACCACAACCATCGAATTCTCTATGAGAAAAGTCGTCAGTGTGGATACTTCCTAGACAATACCACAGTTTA
GTCATAGAGACCAATACCAACAGCAACATCAGCTGGGAATAGAAAGCCCCATAGCAGCAGCTGGCGCAATAGAAGTCACCACCAGCAGTTCGGCTGGGGA
TTCAACTCAAGCCAAAGAGAAATAATCACAGCTAGCAGATCAGTAGTTCAACATCTCACCCATGCTTNNNNNNNNNNCCTTGTGTGTACAGCCAGGAGAG
GCTAGGGTGAGTGAATGAGAGGTCAGAGGAGTAGTAGGAGAAGCAACCAGTAGCAGATCAAGCAAGATGGAGCAGAAATCAAGCAAGAGGATCAACTCCA
GGAAAAGCAAGGGAAGTAGCAGATCCAGATGCCAATAAATATTTTCACATATCTTACCATATAAACCAAAGCAGCAAGAAGATGCTGAAGTGAGACAGCA
GAGAGAGCAACCTGAAGAAGGAGCAAGTGGTGTTCCAGCAGAGTTACCATTGATCCAGAGAAGCAGCAGTTGAGAGGAGGATCTGGACTTCTGAAGGAGG
AGTTGAACCACACATCTTTCAGTCACCATAGAATCAATAGAGGTAACCAATAGGATAAGAATACTTTAACCT