Detailed information on CNT30370421


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692082Oryza glumipatulaOryza sativa35.1810.1487.46279forward
CNT30553953Oryza glumipatulaOryza glaberrima100.1391.5899.5794forward
CNT30597073Oryza glumipatulaOryza meridionalis31.1526.783.4247forward
CNT30108006Oryza glumipatulaOryza longistaminata34.4311.8292.31273forward
CNT30102134Oryza glumipatulaOryza rufipogon10099.8799.75793forward
CNT30576731Oryza glumipatulaOryza barthii95.2192.9899.47755forward
CNT30115613Oryza glumipatulaOryza nivara95.2195.4599.74755forward

Expression of CNT30370421

Peptides detected in this lncRNA

>peptide 1 (48 aa)
QNITHLLPLLFFFSFSSSPSRSTQRRCFPGSAVALPCACCHAPLRRPF*

>peptide 2 (57 aa)
KHNPPSSSSFFFLVLFLSLTLHPAPLLPRQCRRSPLRLLPRPTPATLLAAAPQPSPA*

>peptide 3 (39 aa)
MLESWACVPSKRQMRHSWWIPAKNLYLNLQVVGEVVLAL*

Sequence

>CNT30370421
CAAAACATAACCCACCTTCTTCCTCTTCTTTTTTTTTTCTCGTTCTCTTCCTCTCCCTCACGCTCCACCCAGCGCCGCTGCTTCCCAGGCAGTGCCGTCG
CTCTCCCCTGCGCCTGCTGCCACGCCCCACTCCGGCGACCCTTCTAGCCGCCGCCCCGCAACCGTCGCCGGCCTGAATCGGTTTCTTGGCTCCTCGCTTC
TCTGCCCCTAAGCTAATCCCAGCCACCGGTCTCTTGCTGCTGCAGCCGCCGTGGAGATGGCCGGTGGAAACACAGCGCACGCAACTCCGGTGGCTGCATC
CCTTTCCCCCATAGATTACCTTGTTTGATGGTCCTACTGTGGCTGTGGAAGACTGATGATCATGTGACTCTCTGGTTCTACAGCTTCTTCTGAAATTGGA
AGAATGCATGCTTGAATCCTGGGCGTGCGTCCCGTCGAAGCGACAGATGAGGCACTCTTGGTGGATACCTGCGAAGAACCTTTACCTGAATTTGCAAGTC
GTGGGGGAGGTGGTTTTGGCGCTGTAAAAACTCCGGACGCAACTGGTCGCTTGCTCGTTGGTGGAGGCGCCCAGAAAGAGATAGGCTCGGGTAGCCTCTA
AGATGGCTTCGCCCGCGGCGTGTATGTGCTCGCCTTGTTCTTAACCTGTTGATCACCCCCTGCAATTACTTCTCTGCAAGCATAGCAAACTGAAACAACT
GGTTGACAGTTTTAAATTCCTTATTATCAACTATGTCCTGAATTTCGCACCTCAATTCCGAGTAAAAATGACAAATAGAATCTTCGGTTCCCT