« Back to Oryza meridionalis search


Detailed information on CNT30596823


BLAST search results

BLAST vs Swiss-Prot:
sp|P49210|RL9_ORYSJ, E-value = 1e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696028Oryza meridionalisOryza sativa10075.7895.49244forward
CNT30674118Oryza meridionalisSetaria viridis61.8945.0793.38151forward
CNT30521755Oryza meridionalisSetaria italica61.8938.7292.72151forward
CNT30617201Oryza meridionalisSesamum indicum28.2813.8388.4169forward
CNT30631246Oryza meridionalisVigna unguiculata34.8416.3892.9485forward
CNT30709285Oryza meridionalisGlycine max27.8724.8286.7668forward
CNT30226637Oryza meridionalisHordeum vulgare44.6745.898.17109forward
CNT30401115Oryza meridionalisTriticum turgidum82.7987.4584.16202forward
CNT30591617Oryza meridionalisMusa acuminata38.1142.2789.2593forward
CNT30554991Oryza meridionalisOryza glaberrima10077.7193.85244forward
CNT30438317Oryza meridionalisAegilops tauschii100.4177.0486.12245forward
CNT30142046Oryza meridionalisLolium perenne58.238.0794.37142forward
CNT3016173Oryza meridionalisZea mays59.8448.8391.78146forward
CNT30688026Oryza meridionalisTriticum urartu96.3174.8483.4235forward
CNT30722702Oryza meridionalisTriticum spelta100.4172.0684.49245forward
CNT30348128Oryza meridionalisEragrostis tef58.217.6492.96142forward
CNT30368812Oryza meridionalisSorghum bicolor40.9820.7991100forward
CNT30103407Oryza meridionalisOryza rufipogon104.174.0596.06254forward
CNT30583248Oryza meridionalisEchinochloa crusgalli102.4650.9291.2250forward

Expression of CNT30596823

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MRFWTWEMALRVSFPRGPSTVTTFAATCTVTPSGISIVSDAR

>peptide 2 (80 aa)
LAQEVPDLDGGVGVGDGGVDGEVSVDEAHLVAVALGDAGDEVLDVGDGVAGQLPAGALHRHHLRGDLHRHPLRDLHRLGRQ

Sequence

>CNT30596823
CTCGCCCAAGAAGTTCCTGATCTCGATGGCGGTGTTGGAGTTGGTGATGGAGGCGTTGATGGGGAAGTGAGCGTAGACGAAGCGCATCTTGTAGCGGTAG
CCCTTGGTGACGCCGGTGATGAGGTTCTGGACGTGGGAGATGGCGTTGCGGGTCAGCTTCCCGCGGGGGCCCTCCACCGTCACCACCTTCGCGGCGACCT
GCACCGTCACCCCCTCCGGGATCTCCATCGTCTCGGACGCCAGG