« Back to Triticum turgidum search


Detailed information on CNT30401115


BLAST search results

BLAST vs Swiss-Prot:
sp|P49210|RL9_ORYSJ, E-value = 7e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696028Triticum turgidumOryza sativa91.7765.8489.62212forward
CNT30670705Triticum turgidumSetaria viridis94.816186.3219forward
CNT30521755Triticum turgidumSetaria italica40.2623.8589.2593forward
CNT30617201Triticum turgidumSesamum indicum26.8412.4287.162forward
CNT30631246Triticum turgidumVigna unguiculata31.1713.8791.6772forward
CNT30226637Triticum turgidumHordeum vulgare44.1642.8695.1102forward
CNT30591617Triticum turgidumMusa acuminata35.0636.8285.1981forward
CNT30554991Triticum turgidumOryza glaberrima91.7767.5286.79212forward
CNT30438317Triticum turgidumAegilops tauschii106.9377.6789.88247forward
CNT3059704Triticum turgidumArabidopsis lyrata22.9411.0488.6853forward
CNT30141587Triticum turgidumLolium perenne53.6846.9794.35124forward
CNT3016173Triticum turgidumZea mays36.3628.0991.6784forward
CNT30688026Triticum turgidumTriticum urartu10073.5796.97231forward
CNT30722702Triticum turgidumTriticum spelta106.9372.6590.28247forward
CNT30348128Triticum turgidumEragrostis tef57.5816.5285.71133forward
CNT30368524Triticum turgidumSorghum bicolor54.5559.1586.51126forward
CNT30596823Triticum turgidumOryza meridionalis87.4582.7984.16202forward
CNT30103407Triticum turgidumOryza rufipogon98.766.4782.89228forward
CNT30583248Triticum turgidumEchinochloa crusgalli101.7347.8682.55235forward

Expression of CNT30401115

Peptides detected in this lncRNA

>peptide 1 (75 aa)
DAAVGGGDGGVDGEVSIHEAHLVAEALGDPRDEVEVLEVAGQRAPGTRHRDHLRRHLHRHLLRDLHRLRRQDRLHL

>peptide 2 (44 aa)
MRLRCLKLRVSVPRGPVTEIIFADTFTVTSSGISIVSDARIVFIF

Sequence

>CNT30401115
CGATGCCGCGGTTGGCGGCGGTGATGGAGGCGTTGATGGGGAAGTGAGCATACACGAAGCGCATCTTGTAGCGGAAGCCCTTGGTGACCCCCGTGATGAG
GTTGAGGTGCTTGAAGTTGCGGGTCAGCGTGCCCCGGGGACCCGTCACCGAGATCATCTTCGCCGACACCTTCACCGTCACCTCCTCCGGGATCTCCATC
GTCTCCGACGCCAGGATCGTCTTCATCTTCG