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Detailed information on CNT30226637


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696028Hordeum vulgareOryza sativa35.2926.0998.8184forward
CNT30674118Hordeum vulgareSetaria viridis96.2268.3689.96229forward
CNT30520037Hordeum vulgareSetaria italica96.2262.7489.96229forward
CNT30617201Hordeum vulgareSesamum indicum26.0512.4287.162forward
CNT30631246Hordeum vulgareVigna unguiculata45.3820.8189.81108forward
CNT30709285Hordeum vulgareGlycine max44.9639.0583.18107forward
CNT30401115Hordeum vulgareTriticum turgidum42.8644.1695.1102forward
CNT30591617Hordeum vulgareMusa acuminata36.5539.5588.5187forward
CNT30555011Hordeum vulgareOryza glaberrima94.9661.9288.5226forward
CNT30438317Hordeum vulgareAegilops tauschii10074.8489.5238forward
CNT3059704Hordeum vulgareArabidopsis lyrata22.2711.0488.6853forward
CNT30142046Hordeum vulgareLolium perenne91.658.4595.87218forward
CNT3016173Hordeum vulgareZea mays43.2834.4593.2103forward
CNT30688026Hordeum vulgareTriticum urartu42.8632.4897.06102forward
CNT30722702Hordeum vulgareTriticum spelta1007088.66238forward
CNT30348128Hordeum vulgareEragrostis tef56.316.6592.54134forward
CNT30368524Hordeum vulgareSorghum bicolor42.0246.9584100forward
CNT30596823Hordeum vulgareOryza meridionalis45.844.6798.17109forward
CNT30103407Hordeum vulgareOryza rufipogon44.9631.299.07107forward
CNT30583248Hordeum vulgareEchinochloa crusgalli48.7423.6394.83116forward

Expression of CNT30226637

Peptides detected in this lncRNA

>peptide 1 (48 aa)
DAPVGGGDGGVDGEVSVDEAHLVAEALGDAGDEVLDVGDGGADGGHGA*

>peptide 2 (47 aa)
MRFWTWEMAVRMAAMVLEVAGQGAARPRHRDHLGRHLHRHLLRDVHRL

Sequence

>CNT30226637
GATGCCCCGGTTGGCGGCGGTGATGGAGGCGTTGATGGGGAAGTGAGCGTAGACGAAGCGCATCTTGTAGCGGAAGCCCTTGGTGACGCCGGTGATGAGG
TTCTGGACGTGGGAGATGGCGGTGCGGATGGCGGCCATGGTGCTTGAAGTTGCGGGTCAGGGTGCCGCGCGGCCCCGTCACCGAGATCATCTTGGCCGAC
ACCTTCACCGTCACCTCCTCCGGGATGTCCATCGTCTC