Detailed information on CNT3016173


BLAST search results

BLAST vs Swiss-Prot:
sp|P49210|RL9_ORYSJ, E-value = 9e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696028Zea maysOryza sativa42.1439.1390.48126forward
CNT30674118Zea maysSetaria viridis50.545.0790.73151forward
CNT30521755Zea maysSetaria italica50.538.7290.73151forward
CNT30631246Zea maysVigna unguiculata28.4316.3890.5985forward
CNT30226637Zea maysHordeum vulgare34.4543.2893.2103forward
CNT30401115Zea maysTriticum turgidum28.0936.3691.6784forward
CNT30591617Zea maysMusa acuminata31.142.2787.193forward
CNT30555011Zea maysOryza glaberrima50.1741.192150forward
CNT30438384Zea maysAegilops tauschii80.2744.4482.5240forward
CNT30142046Zea maysLolium perenne50.540.4890.73151forward
CNT30688026Zea maysTriticum urartu40.838.8586.07122forward
CNT30722702Zea maysTriticum spelta34.4530.2992.23103forward
CNT30596823Zea maysOryza meridionalis48.8359.8491.78146forward
CNT30103407Zea maysOryza rufipogon50.544.0292.05151forward
CNT30583248Zea maysEchinochloa crusgalli50.530.7594.04151forward

Expression of CNT3016173

Peptides detected in this lncRNA

>peptide 1 (98 aa)
LLLAEEVPNLDGCVAVGDGGVDGEVGVDEPHLVAVALGDPLDEVLDVGDGVHLELAAGLLQLEVEVEVLEVAGELAAGALHRDQLGGHRDHDALRDVHR

>peptide 2 (57 aa)
MRFWTWEMASTLSLRPASCSWKSRLRCLKLRVSLPRGPSTVTSLAATVTMTPSGMSIV

Sequence

>CNT3016173
CTTCTTCTCGCCGAGGAAGTTCCTAATCTCGATGGCTGTGTTGCTGTTGGTGATGGAGGCGTTGATGGGGAAGTGGGCGTAGACGAACCTCATCTTGTAG
CGGTAGCCCTTGGTGACCCCCTTGATGAGGTTCTGGACGTGGGAGATGGCGTCCACCTTGAGCTTGCGGCCGGCCTCCTGCAGCTGGAAGTCGAGGTTGA
GGTGCTTGAAGTTGCGGGTGAGCTTGCCGCGGGGGCCCTCCACCGTGACCAGCTTGGCGGCCACCGTGACCATGACGCCCTCCGGGATGTCCATCGTCT