Detailed information on CNT30674118


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521755Setaria viridisSetaria italica95.5282.0594.38320forward
CNT30617201Setaria viridisSesamum indicum33.4322.4486.61112forward
CNT30631246Setaria viridisVigna unguiculata49.2531.7984.24165forward
CNT30709285Setaria viridisGlycine max31.9439.0584.11107forward
CNT30226637Setaria viridisHordeum vulgare68.3696.2289.96229forward
CNT30591617Setaria viridisMusa acuminata27.7642.2790.3293forward
CNT30555011Setaria viridisOryza glaberrima89.5582.1988300forward
CNT30142046Setaria viridisLolium perenne88.0679.0988.47295forward
CNT3016173Setaria viridisZea mays45.0750.590.73151forward
CNT30596823Setaria viridisOryza meridionalis45.0761.8993.38151forward

Expression of CNT30674118

Peptides detected in this lncRNA

>peptide 1 (59 aa)
HLLLAEEVADLYGGVGVGDGCVDGEVGVDEAHLVAVSLGDAGDEVLDVGDGGADGGHGA*

>peptide 2 (68 aa)
MRFWTWEMAVRMAAMVLEVAGELAPRPFHRHHLGRHLDGDLLGDVHGLGSEDRLHLAAPAETNGRAAGE

Sequence

>CNT30674118
TCACCTTCTTCTCGCCGAGGAAGTTGCGGATCTCTATGGCGGTGTTGGCGTTGGTGATGGATGCGTTGATGGGGAAGTGGGCGTAGACGAAGCGCATCTT
GTAGCGGTATCCCTTGGTGACGCCGGTGATGAGGTTCTGGACGTGGGAGATGGCGGTGCGGATGGCGGCCATGGTGCTTGAAGTTGCGGGTGAGCTTGCC
CCGCGGCCCTTCCACCGTCACCACCTTGGCCGCCACCTTGACGGTGACCTCCTCGGGGATGTCCATGGTCTCGGAAGCGAGGATCGTCTTCATCTTGCTG
CGCCGGCGGAGACGAACGGGAGGGCGGCGGGGGAG