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Detailed information on CNT30596209


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005903, E-value = 4e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690627Oryza meridionalisOryza sativa10.5343.8897.67129reverse complement
CNT30111129Oryza meridionalisOryza longistaminata17.2229.9393.84211forward
CNT30102652Oryza meridionalisOryza rufipogon11.6732.4384.62143forward
CNT30576929Oryza meridionalisOryza barthii18.4528.3698.23226forward
CNT30116366Oryza meridionalisOryza nivara12.6547.9998.06155reverse complement
CNT30550395Oryza meridionalisOryza brachyantha9.2228.8389.38113forward

Expression of CNT30596209

Peptides detected in this lncRNA

>peptide 1 (95 aa)
VHAATSPQNQSRPISFPATCLHCIGPGQLSPPPNRSRQAEEEKKKGRCEPADSPFSPGNLTIRHSCDIAVVASQRGHPRPPSLLPGDRRHLPTPA*

>peptide 2 (74 aa)
MKLKNEVTVVWLATFPGVQINQFGYGTRIVRVAAYRLFGYHLMDQTSLSCLFICRCYLELSAVVVRVNSNICME*

>peptide 3 (47 aa)
PRGHVAPKSVASNLFPSHVFALYRARPIEPTTQSLTTGRGGKKKGAL*

Sequence

>CNT30596209
GTCCACGCGGCCACGTCGCCCCAAAATCAGTCGCGTCCAATCTCTTTCCCAGCCACGTGTTTGCATTGTATCGGGCCAGGCCAATTGAGCCCACCACCCA
ATCGCTCACGACAGGCAGAGGAGGAAAAAAAAAAGGGGCGCTGTGAACCCGCTGATTCCCCATTCTCTCCGGGAAATTTAACTATTCGTCACTCTTGTGA
CATCGCCGTCGTCGCTTCCCAGCGAGGCCATCCACGGCCACCGTCGCTTCTTCCCGGAGACCGCCGCCATCTCCCCACCCCCGCGTGACACCACTTCTTG
CCCTCTCCATCTAGGGTTTTCTCGGGCCTCGAATCGCTGTAAGCCCCTCGACGACTTCTTTGGTTGTTTTGCTTGGATCTCCAGCTCAGGGGAGCGCTGC
TTTGATTTGGGGATTGTGCCTCTCTTGCCTCTCTGGTGTGGAGCGATCAGTGTGGCGTTGTTTTCTCTTAAGCTAGGGTTAGTGCTTAGTACTGTAGGTG
GGAAAGCAATTTCTTTTTTTTTTTGGGGGGTGGGGGGATGAACTCTTGGCTTCTTCTTTAGATGGTACCTTTGATTGGGTGTGCCGTGGAATTGCCTGCC
ATGCTTGATAATTTTGGTATCCCCTGAGTAGAAAGCATGTTCCGCTGCCACGTTGGTGTAGCATCACATAGGCTAATCATGGATTAATTAGGCTCATTAG
ATTCGTCTCGCAAATTAGTCTAAGATTATGGATGGGTTTTATTAATAGTATACGTTTAATATTTATAATTAATTTTCAAACATCCGATGTGATAGGGACT
TAAAAGTTTTAGTCCCATCTAAACAGGGCCTCGGTATATGAAGCTCAAGAATGAAGTGACCGTTGTCTGGCTTGCAACCTTTCCAGGGGTACAAATCAAT
CAGTTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAATGGATCAAACAAGCTTGTCATGTTTGTTTATATGCA
GGTGCTATTTGGAATTAAGTGCAGTGGTTGTACGGGTTAATTCAAACATATGTATGGAGTAGAGTTCAGAGAAAGTGGCTAGCAAGTAGGCCCCACATTT
TTTATATTTTTTCCTAGGCACTTAAATGTGGGCTTTACCTGTATTTGTGACTGGGTTGCTCCATCATCACAAAGTTGACTAAGTCAAAGGGTCACGTTAA
CAAAACCCTCCAAAACACTATCGAG