| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30695924 | Oryza nivara | Oryza sativa | 97.52 | 17.3 | 98.1 | 315 | forward |
| CNT30675102 | Oryza nivara | Setaria viridis | 46.75 | 60.64 | 82.12 | 151 | forward |
| CNT30523910 | Oryza nivara | Setaria italica | 54.18 | 53.85 | 82.86 | 175 | reverse complement |
| CNT30554719 | Oryza nivara | Oryza glaberrima | 57.59 | 13.42 | 89.78 | 186 | reverse complement |
| CNT30472158 | Oryza nivara | Saccharum spontaneum | 34.67 | 6.86 | 82.14 | 112 | reverse complement |
| CNT3068416 | Oryza nivara | Leersia perrieri | 74.61 | 14.75 | 84.65 | 241 | forward |
| CNT30596209 | Oryza nivara | Oryza meridionalis | 47.99 | 12.65 | 98.06 | 155 | reverse complement |
| CNT30371309 | Oryza nivara | Oryza glumipatula | 58.51 | 20.13 | 85.19 | 189 | reverse complement |
| CNT30110945 | Oryza nivara | Oryza longistaminata | 97.52 | 33.16 | 96.83 | 315 | reverse complement |
| CNT30102711 | Oryza nivara | Oryza rufipogon | 97.83 | 22.24 | 97.78 | 316 | forward |
| CNT30577391 | Oryza nivara | Oryza barthii | 99.07 | 22.5 | 91.56 | 320 | reverse complement |
| CNT30558913 | Oryza nivara | Panicum hallii | 34.67 | 4.24 | 86.61 | 112 | forward |
| CNT30551838 | Oryza nivara | Oryza brachyantha | 78.33 | 8.12 | 84.58 | 253 | reverse complement |
>CNT30116366
TAAAACTTTTAAGTCCCTATCATATCGGATGTTTGAAAATTAATTATAAATATTAAACGTAGACTATTAATAAAACCCATCCATAATCTTGGACTAATTT
GCGAGACGAATCTAATGAGCCTAATTAATCCATGATTAGCCTATGTGATGCTACAGTAAACATTCTCTAATTATAGATTAATTAGGCTTAAAAAATTTGT
CTCGCGAATTAGCTTTTATTTATGTAATTAGTTTTGTAAGTAGTCTATATTTAATACTCTAAATTAGTGTCTAAAGACAGGGACTAAAGTTAAGTCCCTG
GAGGTAAACACCACCAAAGAAAC