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Detailed information on CNT30111129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554522Oryza longistaminataOryza glaberrima64.8242.2893.22457forward
CNT30596209Oryza longistaminataOryza meridionalis29.9317.2293.84211forward
CNT30102064Oryza longistaminataOryza rufipogon94.6132.399.4667forward
CNT30577176Oryza longistaminataOryza barthii41.4218.3393.84292forward

Expression of CNT30111129

Peptides detected in this lncRNA

>peptide 1 (62 aa)
CCGFLDGFYQTLSDTSPSFLFLTIIYMPISFCPKHMFILMHRSAMTKSMLRSFNLLQFSLLL*

>peptide 2 (68 aa)
MHKSVAYFSTNQYIAVPNEHEHFSFQYMKFMNEVTVVRLATVPWCKSISLDMEHALYGLLLIGCLDIT*

>peptide 3 (61 aa)
MVQINQFGYGTRIVRVAAYRLFGYHLMDQTSLSYLFIYMCYLELSAVVVRVDSELIPAYIR*

>peptide 4 (45 aa)
AAAVFLMDFIKLSRILPPLSYFLQSFICRSVFVQNICLFSCIDLQ*

Sequence

>CNT30111129
GCTGCTGCGGTTTTCTTGATGGATTTTATCAAACTCTCTCGGATACTTCCCCCTCTTTCTTATTTCTTACAATCATTTATATGCCGATCAGTTTTTGTCC
AAAACATATGTTTATTCTCATGCATCGATCTGCAATGACCAAATCTATGCTTCGATCTTTTAATTTGCTACAGTTTTCCCTGCTTCTCTAATCAGTACCA
TTACAGATTTGTCTCTGTGACTGTTTATTGTACTTTCAAATTGCTCTACAGTGCATGCACAAGTCTGTTGCCTATTTTAGTACTAACCAATATATAGCTG
TTCCCAACGAACATGAACATTTCAGCTTTCAGTATATGAAGTTCATGAATGAAGTGACCGTTGTCCGGCTTGCAACTGTTCCATGGTGCAAATCAATCAG
TTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAATGGATCAAACTAGCTTGTCATATTTGTTTATATACATGT
GCTATTTGGAATTAAGTGCAGTGGTTGTACGGGTTGATTCAGAGTTGATCCCAGCTTATATCAGATAAAAAGGTCACACATCATTCTGTGAAACTGGACC
ATCTCCAGATGCATTAGTGATCAACCTACAAGTTGCTTTCATCTTTTAGGGACAGAGGTAGCAAGTAAGAAGTATGACATAACATACAAAATAGAGTTGT
TTTTT