Detailed information on CNT30550395


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670881Oryza brachyanthaSetaria viridis11.2220.8597.7344forward
CNT30596209Oryza brachyanthaOryza meridionalis28.839.2289.38113forward
CNT30105855Oryza brachyanthaOryza longistaminata28.8312.5793.81113reverse complement
CNT30102711Oryza brachyanthaOryza rufipogon28.837.9591.15113reverse complement
CNT30577391Oryza brachyanthaOryza barthii28.837.9593.81113forward

Expression of CNT30550395

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MLNYREFNLNYMLPNRECILTKYNTHITWYPIHPKIIQLLKININTNLSKFILTKLKFLDRWCKP*

>peptide 2 (36 aa)
CSITYANHGLIRLNRFVSRISPRLWMNLLIVYVYYL*

Sequence

>CNT30550395
TGTAGTATCACATATGCTAATCATGGACTAATTAGGCTTAATAGATTCGTCTCGCGAATTAGTCCAAGATTATGGATGAATTTATTAATAGTCTACGTTT
ACTATTTATAATAGGTATGCAAACATTCGATGGGACAATGGGCTAAACTTTAACCCCCTGTCCCAAAATATCTGATGCTTAATTACCGTGAGTTCAACCT
GAATTACATGCTACCCAATCGTGAGTGCATACTAACCAAGTACAACACACATATTACATGGTACCCAATCCATCCTAAAATAATCCAACTTCTAAAAATA
AATATAAATACCAATTTATCTAAATTCATACTCACAAAGTTGAAATTTTTGGACAGATGGTGTAAGCCTTAGCATGCAGAGATGAAGTGTTG