Detailed information on CNT30576929


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596209Oryza barthiiOryza meridionalis28.3618.4598.23226forward
CNT30102064Oryza barthiiOryza rufipogon28.4810.9992.95227forward

Expression of CNT30576929

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MKLKNEVTVVWLATFPGYKSISLDMEHALYGLLLIGCLDIT*

>peptide 2 (46 aa)
MMTAILLGLEKRIWTTGGSDQDLTQLHLQLTTQPRTFQLSVYEAQE*

>peptide 3 (49 aa)
MDETRLSCLFICRCYLELSAVVVRLNSNICMSRFVVLECITSDSRLFFL*

>peptide 4 (49 aa)
MLDNFGIPCVESMFRCHGGQGCPCASIISTKEAVAFQISLSGKLGRTLH*

>peptide 5 (35 aa)
MEDRDAPVLLLSPPRRLLHSRSPCQASSGGRYIEP*

>peptide 6 (39 aa)
MPLCFYYLHQGGCCIPDLPVRQAREDATLSHDDCNTSRP*

Sequence

>CNT30576929
GGGGGGATGAACTCTCGGCTTCTTCTTTAGTTGGTACCGTTGATTGGGTGTGCCGTAGAATTGCCTGCCATGCTTGATAATTTTGGTATCCCCTGTGTAG
AAAGCATGTTCCGCTGCCATGGAGGACAGGGATGCCCCTGTGCTTCTATTATCTCCACCAAGGAGGCTGTTGCATTCCAGATCTCCCTGTCAGGCAAGCT
CGGGAGGACGCTACATTGAGCCATGATGACTGCAATACTTCTAGGCCTTGAGAAGAGGATTTGGACCACTGGTGGTTCTGACCAAGATTTAACGCAGTTA
CACCTTCAGTTGACCACTCAACCAAGAACATTTCAGCTTTCGGTATATGAAGCTCAAGAATGAAGTGACCGTTGTCTGGCTTGCAACCTTTCCAGGGTAC
AAATCAATCAGTTTGGATATGGAACACGCATTGTACGGGTTGCTGCTTATAGGTTGTTTGGATATCACTTAATGGATGAAACAAGGTTGTCATGTTTGTT
TATATGCAGGTGCTATTTGGAATTAAGTGCAGTGGTTGTACGGCTTAATTCAAACATATGTATGTCTAGATTCGTAGTACTAGAATGTATCACATCCGAT
AGTAGATTATTTTTTTTATAGGACAGAGGGAGTAGAGTTCAGAGAAAGTGGCTAGCAAGTAGGCCCCACATTTTTTATATTTTTTCCCAGGCACTTAAAT
GTGGGCTTTACCTGTATTTGTGACTGGGTTGCTCCATCATCACAAAGTTGACCAAGTCAAAGGGTCACGTTAACAAAACCGTCCTGTAAAACTATCG