Detailed information on CNT30188246


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 1e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695960Secale cerealeOryza sativa56.9457.3291.54603forward
CNT30641326Secale cerealeNymphaea colorata48.7346.287.21516forward
CNT30554923Secale cerealeOryza glaberrima54.1151.8190.23573forward
CNT30250278Secale cerealeAvena sativa62.5166.6792.3662forward
CNT30455809Secale cerealeSaccharum spontaneum59.0257.3989.6625forward
CNT30345522Secale cerealeEragrostis tef43.8146.7394.4464forward
CNT30363150Secale cerealeSorghum bicolor49.0142.9393.45519forward
CNT30369277Secale cerealeOryza glumipatula53.0757.6490.21562forward
CNT30103422Secale cerealeOryza rufipogon52.9743.2590.73561forward
CNT30575045Secale cerealeOryza barthii59.2166.4291.71627forward
CNT30582321Secale cerealeEchinochloa crusgalli55.2461.4591.45585forward
CNT30497363Secale cerealeDigitaria exilis46.3641.7290.22491forward
CNT30117559Secale cerealeOryza nivara54.1153.8590.23573forward
CNT30604592Secale cerealeOryza punctata49.0152.0692.29519forward
CNT3063784Secale cerealeSelaginella moellendorffii49.0145.2587.48519forward

Expression of CNT30188246

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIARCGLASFLASGELRLTVGGAGG

>peptide 2 (43 aa)
MAWTKNPNMENMARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 3 (29 aa)
MAQRQWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30188246
AGTCGTTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACATAAACACCATCTTTTAGTGTACACACACCAACTCATCAT
CTCGACTCGCCCTCACATGCAACATCTATCAGTCCGGACTCAGTCTCAAAACGGAAAGACATGCAGCAGCAGCATCCATCAGCCATGAAGTTGTCGGCCA
TGCCCGCGCGTGCACGCACGCGCTAGAGCTAGAGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTCTCGAGGGG
CCCCTTGCCGGTGACGATGGCCTGGACGAAGAACCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCC
TCGGGGTCCTCGGCGAGGCCCAGGGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCCAGCGGGCCGCCGGCCACGCGGTAGCCCTCCA
CGGCGCCCATGAGCACCACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACGAGGCTGGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAA
GATCTGGGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAGACGCAGCCCAGCGCGCCGAGCATGGCC
CAGCGGCAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGACAGCCCCGCGGTGTCCCAGCCGTAGTCCCCGGGGAACTCGC
CGGTGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGAGGCGGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGCG
GCCCTCGCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCGCGCTGCGGA
CTCGCTAGCTTTCTTGCTTCGGGTGAGCTGAGGCTGACTGTAGGAGGCGCTGGTGGTCG