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Detailed information on CNT30250278


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 8e-147

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188246Avena sativaSecale cereale66.6762.5192.3662forward
CNT30582321Avena sativaEchinochloa crusgalli58.9161.4591.45585forward

Expression of CNT30250278

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENMARRPFLSSLTLSSAKASGSSARPRGSKLPPG*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (38 aa)
MVMRPSPKGEALEAFTGVPAIAGEESAMVEAAINCSLV*

Sequence

>CNT30250278
CAGAGAAACCAATAATAATTAAGCAGAAGAAGCAAAGATGCCTTGATGAATAACCATAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTCG
ACTCGCCTTAACATGATCTATCAGTGACGACACACACATGCAGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCT
AGAGGTTGAGCTTACTAATAAGCTCTTACTTGCCAGGGACGAAGTTGGTGGCGAAGAATCCGAACATGGAGAACATGGCGAGGCGTCCGTTCTTGAGCTC
CTTGACCTTGAGCTCTGCGAAGGCCTCCGGGTCGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGACGATCTCACCCAGCGGT
CCACCGGCGACGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGACAGGCCCAGATGGCGAGGATACTCTGGGCGTGTACGAGGCTGGGGTTGCCGA
GGTAGTCGAGGCCTCCCTCGCTGAAGATCTGGGAGCCTGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCATTGCGGGCGAGCAGCTCGGGGAAGAC
GCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGTCC
CAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCTGCCGGACGCGGACACCTTGGGCTTGG
CGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCACGGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGT
GGAGGCTGCCATTAATTGCTCGCTAGTCTGAGGTGAGGTGCTTCGAGTGAGCTCTCAGGTAGTAGTAGGAGCTGGTGGTGTCTGTTGGTGCTG