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Detailed information on CNT30577250

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004481, E-value = 7e-31

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691818	Oryza barthii	Oryza sativa	31.87	7.16	90.95	210	forward
CNT30368410	Oryza barthii	Sorghum bicolor	20.64	15.54	81.62	136	forward
CNT30109604	Oryza barthii	Oryza longistaminata	32.02	16.32	89.1	211	forward
CNT30103117	Oryza barthii	Oryza rufipogon	31.71	5.81	85.65	209	forward
CNT30115866	Oryza barthii	Oryza nivara	28.53	9.75	85.11	188	reverse complement

Expression of CNT30577250

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MELFPSQPDLSLQIGLPTGAAAAAHGHGLNARFFAAAAGAGGHNPAMASSPPS

>peptide 2 (28 aa)
MATASTRGSLPPPRERVATTRQWRRRRRR

Sequence

>CNT30577250
CATGCATTGAGTATGAAATGTAGACGAAAAAAACCAATTGCACAGATTGCGTGTAAATTGTGAGACGAATCTTTTAAGCCTAATTGCGCTATGATTTGAC
AATGTGGTGCTACAGTAAACATTTGCTAATGACGGATTAATTAGACTTAATAAATTTATCTCGCAGTTTCCTGACGGAATCTGTAATTTGTTTTATTATT
AGAGTACGTTTAATACTTTAAATATGTATCTGTATATCCGATGTAGCACGTAGGGCAAAGCAAGGCCATACAACTACTATTCCTCACATATTCCCCAAAC
CAGAGTAAAATTACATTTTTACCCCCCTCATCACTTTCTCTCTCTACCACTCACTTAAAAAGGGGAAGTACCACACATACAATCCATTGCTTGCTCAAAG
AAAGTAGAGAGTGTGTGAAAGCTGAGCTGATCTCTCAAGAACAAGAGAAGAGGAGGCAGAAGCAAAGTGAGATCAAGCTGATAGTGAGAGTGAGATCAAT
GGAGCTCTTCCCTTCGCAGCCGGATCTTTCCCTCCAGATCGGCCTCCCCACCGGCGCAGCCGCGGCGGCGCATGGCCACGGCCTCAACGCGAGGTTCTTT
GCCGCCGCCGCGGGAGCGGGTGGCCACAACCCGGCAATGGCGTCGTCGCCGCCGTCGTC