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Detailed information on CNT30109604


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006462, E-value = 1e-77

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691818Oryza longistaminataOryza sativa22.129.7587.41286forward
CNT30670881Oryza longistaminataSetaria viridis7.0443.1390.1191reverse complement
CNT30524066Oryza longistaminataSetaria italica7.0439.9192.3191reverse complement
CNT3067983Oryza longistaminataLeersia perrieri13.8426.5294.41179forward
CNT30103117Oryza longistaminataOryza rufipogon24.758.8985320forward
CNT30577250Oryza longistaminataOryza barthii16.3232.0289.1211forward

Expression of CNT30109604

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLKLLPTALVCTMLLCPILWVNCDSHTHHS*

>peptide 2 (63 aa)
MNCLLWFSERIICLMLLAWFLGMGLDSSCLQAYCWNFVKCHAEVTANSPCLHHVALSNFMGEL*

>peptide 3 (56 aa)
GAWGSRAADEGGGEGVPPRPPRRVRDPLRPLLPHRLRPLQGSHVTTRVQLDLCQEA*

>peptide 4 (66 aa)
GRGDPGLLTRAVEKVFRLVRLAEFEILFVLFFLIAFVLFKDLMSRPEYNSIFVKKPDLDGRWPGLM*

>peptide 5 (65 aa)
MVHCKSCLLDHLLRMVNFYMYVIPVKRTEIFILVIGSYCHCSVVLDGYSSPNTCIGSLISISIHN*

Sequence

>CNT30109604
GGGGCGTGGGGATCCCGGGCTGCTGACGAGGGCGGTGGAGAAGGTGTTCCGCCTCGTCCGCCTCGCCGAGTTCGAGATCCTCTTCGTCCTCTTCTTCCTC
ATCGCCTTCGTCCTCTTCAAGGATCTCATGTCACGACCAGAGTACAACTCGATCTTTGTCAAGAAGCCTGATCTAGATGGGAGATGGCCAGGACTCATGT
AATGTTTGTGTAGTGTGATCAATGTTGTTCTTTTTCCTCTTGCCCAAAGTACACTTTTGAGGTGCTTCTTTGACTTCAGTTCTTATGACTACTAATGTTA
TCTTTCAAGATGATGAATATAGTTTTTGATGAATTGCCTTCTTTGGTTTTCTGAAAGAATCATTTGCTTAATGCTATTGGCATGGTTTCTTGGTATGGGT
CTTGATTCTTCTTGTTTGCAAGCTTACTGCTGGAATTTTGTTAAGTGTCATGCTGAAGTTACTGCCAACAGCCCTTGTTTGCACCATGTTGCTCTGTCCA
ATTTTATGGGTGAATTGTGATAGCCATACCCATCACTCCTGAGAGAAGCTTGGTGTTTGATGTTTTGATAACCTTGCTTCTTTTGTTAAGGCCCTGTTTA
AATCCCACCCCAAAATTTTTCACCCTTTCATATCGAACGTTTGGAGACATGCATGGAGTATTAAATGTGGACCGAAAAAAACCAATTACATAGTTTGCGT
GTAAATTGCGAGACGAACCTTTTAAGCCTAATTGCGCCATGATTTGACAATGTGTTGCTACAGTAAACATTTGCTAATGACGGATTAATTAGGCTTAACA
AATTTGTCTCACAGTTTACAGGCGGATTATGTAATTTGTTTTGTTATTAGACTATGTTTAATACTTCAAATGTGTCTCCGTATATCCGATGTGACACGCC
AAAACTTTACACCCTGAATCTAAACACCCCCTAAGTCAGTCATTTTGGTTCTGAGACTAATTTTGTCATGAAACCTGTCCTGTTAGGCTTATAGTTGTTG
GGTCAGCTATTCAATGTTGCCTATTTCAATCTTTGCACCTCCTCTCAAGTTATAACTGTACTGTAAGTTTATATGGTTCACTGTAAATCTTGCCTTCTCG
ACCACCTCTTAAGAATGGTAAATTTCTATATGTATGTAATTCCTGTGAAAAGAACAGAAATTTTCATCTTAGTCATAGGCTCATATTGTCATTGTAGTGT
GGTACTGGATGGTTATTCAAGTCCCAATACTTGTATTGGAAGTTTGATATCCATTTCTATACATAATTAAATAGACATACAAGTGAAACTGGG