Detailed information on CNT30103117


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004481, E-value = 9e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696319Oryza rufipogonOryza sativa8.6721.6285.26312reverse complement
CNT30670881Oryza rufipogonSetaria viridis3.4458.7786.29124reverse complement
CNT30109604Oryza rufipogonOryza longistaminata8.8924.7584.38320forward
CNT30577250Oryza rufipogonOryza barthii5.8131.7185.65209forward

Expression of CNT30103117

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MNHQPRPCLVSTQKLFTLSHRMFGHMHEVLNIDKKTNYTYCV*

>peptide 2 (43 aa)
MDLIKLKDTNTIHPSGSDAFAPRNWVGNGKLGCRRANVKTSPH*

>peptide 3 (49 aa)
MVYEAAVASAARSHEHQVRKEKKQKQIGCSILWAFRRIYPTASSASGKK*

>peptide 4 (33 aa)
FESILLTDDSIRNSIQTHSPELLKQASNLSLCS*

>peptide 5 (35 aa)
MLSPQEIGSGMASWAAEEQMSRRRLTNMVGPNLGI*

>peptide 6 (33 aa)
MRDEWIFFSLFSLAFSLCNPSRGCVQKIVISAV*

>peptide 7 (33 aa)
MQHPLGFQEDLPNSLQRLREEMIEGYHAVTVAS*

Sequence

>CNT30103117
ATTTGAGTCAATACTTTTGACCGATGACTCCATCAGAAATTCAATTCAGACACATTCACCTGAACTCCTGAAGCAGGCAAGCAATTTGTCACTCTGTTCT
TGACAAGAACACAAGAAAAAAAGCAGCAGTTTTTTCTCTGCAGCAATGGTGTACGAAGCAGCTGTGGCCAGTGCAGCAAGAAGCCATGAACATCAGGTGA
GGAAGGAGAAGAAGCAGAAGCAGATTGGATGCAGCATCCTCTGGGCTTTCAGGAGGATCTACCCAACAGCCTCCAGCGCCTCAGGGAAGAAATGATTGAA
GGTTATCATGCTGTGACAGTTGCATCATGATGTAAATACATACATAACAGGTCAAAAGACTTTTCTTTTCTTTTCATAGATGACAATGTTAACTTTTCGA
TACTCGTTTGACCATTAGTCTTATTTAAAAAAAATTATGTAATTATCATCTATTTTGTTGTGAGTTGTTTTATCACTAAAAATATCTTTATGTATTTGCA
TAAAATTTTTAAATAAGATGAATGGTTAAATGTGTAAGCATTGTGATTGTAGCCACGAAAGAATGGAACATGGTGTACAATGAATTGTTGTTGTAGTCAT
GGATCTTTTGATACAACATCCAGGTGATGATGACATGATGTATCATTCAGAAGCACTTGATTACAGTTCTGACTTGTGAATGATAGTGCAGCACAGGAAA
TGAACCACCAACCTAGGCCCTGTTTAGTTTCCACGCAAAAACTTTTCACTCTGTCACATCGAATGTTTGGACACATGCATGAAGTATTAAATATAGACAA
AAAAACTAATTACACATATTGTGTGTAAATTGCGAGATGAATCTTTTAAACCTAATTGCTCTATGATTTGACAATGTGGTGCTACAGCAAACACTTGCTA
GTGACGGATTAATTAGGCTTAATAAATTCGTCCCGCGGTTTATCGGCGGAATCTGTAGTTTGTTTTGTTATTAGTCTATATTTAATACTTTAAATGTGTG
TCCATATATCTGATGTGACACATCAAAACTTTTTGCCCCTGAATCTAAATACATACCTACTCTGTTGATTGCCAAAAACCAGAGGATCGTGCAACTTCCT
GTTGATATTATGAGGTGATGGGTGTGCGGTGCTGGATCTAGCAACGTTGCCTGACCCTCTCACAAACCACAACGGCTAGTTTCCAACAGTTATAACACAA
GAATTACTCCCAAAATCCTACAAATATAGCAACCTAGTATTGTCTATGTTCAGATTTCTAGTATTAGGATGTGTCTAATCAAATAATAGATCGGTGTATT
TTTGGACAGAGAGGTAATAATCAATTCTGGCATACAACAAATGTAGAATGAAACTATAAACAAACTTTTCTCTCTCTCTCGTTCATCTTGCTTGGCCTCC
TACGCTCTTTGTCATCCATACAAGAAGCAAACTTGGTGACAGCTGATTGTACATCACTCCAACAATTCACGAGAGAATTATGATTGCGATCCAAATAGAT
CGAATTTCTTGTGCTCAAGGAAATAAGAATGAATCATGATCCAATAGCTAGAGCAAGGTTGTTTGTTACCAGTAACTAGGATGTGTCTAACCCAATACTA
AGTTGCTATATTTTTAGACAAAAAAAGTAATAATCAATTTCAACATACAACAAAATATACCAAGAAACTAGAAACAAACCTCATCTCTCTCGTTCATCTT
GCTTGGCCTCCTACGCCCTCTGTCATCCATACAAGAAGCAAACTTGTTGACAACTGATTATATATCTCTCCAATGATTCATGAGAGAATCATGATTGCGA
TCTGAATCGATCGAGTTTCTTGTGCTCATGGAAATTAGAATGAATCACTATCCTACAACTGATGAAAATTTCCCCCCAAAATTTCTTGCTGCAGAACGGG
AATCTTAGATCCATGATGGAAGAAAAATCTGGCATCTTCTAATGCACGCACTTATGCACAACTAATCTTCTACTTTAAGCGGTTCAATGGTTGAACCACA
CATGGTTTGTCTGTTTAAGTATTCATTACCTTTTGTAGCATTTCAATCTGAGCTCGCTTGACGGCGGAACTTTCTAAGTGTTGTGGTCCTTCTTGAGGGC
ATTGGTAAGGCACCCAGTTCTCTCCTTGGTGGGAACCCCTGAGGGAAAATAGGGTTCAGAACCCTTGGACGAGCGACAGCTATGCTCTTAGCATCATATC
CTTCTTGAAGGCGCCATCTAGCGGTCCCGTTTCTCGCATTCTCTGTCTCAACTCTCAAGCAAATGGGGTATTTTTTGTAAGGCGGCGGGTTTGTATGAGG
GACGAGTGGATCTTCTTCTCTCTCTTCTCTCTCGCCTTCTCCCTCTGCAACCCTTCTCGCGGGTGTGTCCAAAAGATCGTGATTTCAGCTGTTTAGAGGC
ATGAGGCAAGAGCAGGTGGGTCAGTGACAGTTTCGTGGTAGGTTTGGTGGCGTTCGGTCACGCATAGTGGTGTCACATTCGGTACCCGTCTATTGGTGTG
TGTAGGAGATGTCAGCATGTGGTGATGTGTTTTTTTCCTTTTTCCTGATTATAAGCCTCCCAAGGTTATAGTCTTGCAATTTTTTTTGCTATATCAATAT
GAAACATTGCACTATTTTTGTGATATTCATTTTTAAATAAAACAAGCTTGGTCAAATGGAGGCGGAGGTGACATCCGCAATGGAGCTTTAGGGAGGCACC
AACACCGAAGGGGAGACTTGTACAAGGCGAAGCTTGAGGAGACGTTGAAGGTGGCGATGCTTGAAGAGGATCCTCGTGGTGCAGGGCACGACGGCGTTGG
CAGCAGCGCTTCTTGTGAGTAGGTATCACTGGCTAGGTTTGGGTAGCCATCCAACCTATTACCCACATAAAAACCCCCTTGAAGACACTAAGGCCCTGTT
TGTTTCAGCTTAAGATTATTGTAATCTAGATTATTAAATTAGATTACTCTAAGCTGAAATATAATAATCTGACATAAAATAAGCTACGAGTTATTTGTTT
CTCTGGATTATTAGAGGCATCTAAGGGTAGTGGGTCTTTAGCCACTCAACAATCTAAAAAAAGCTCCTCTAGAGGAGATTATTGGATTATAGTAATCTGG
CTTATAGATTATAATAATGTAGCATAATAATCTACTTGTTTGTTTCAACTTACTCCTAGTAATCTAGATTATAATAATTCTAAGCTGAATCAAACAGGGC
CTAAGTAGGGCACCTGAGTTCAGGAACATATAAGAAAGGATGGACCTCATCAAACTCAAAGACACAAACACCATACATCCATCAGGATCAGATGCTTTCG
CCCCAAGAAATTGGGTCGGGAATGGCAAGTTGGGCTGCAGAAGAGCAAATGTCAAGACGTCGCCTCACTAACATGGTGGGCCCCAACCTCGGTATCTGAT
AGCTACGTCCACGGGATCGAGGCTAGGGGCTACCGTTGGTAGAGTGGGTAACATAAGTCCATTATATCACAACCATCATAAAAGAGTAAAAGTCTCATAT
CCCAAACCATGAACCACTATCTCATGTACTTGTATATTGTTTCAGTCCCAATCCAAATGTATATCCAAACACAACCAAAGGGGTTGTTTGGATGAGGGCA