Detailed information on CNT30565287


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184977Actinidia chinensisSecale cereale48.872.9785.19162forward
CNT30304204Actinidia chinensisTriticum aestivum48.871.0586.42162forward
CNT30311641Actinidia chinensisCamelina sativa40.3637.1285.07134forward
CNT30480504Actinidia chinensisArabidopsis halleri21.0821.3485.7170forward
CNT30726082Actinidia chinensisLupinus angustifolius71.6952.8985.29238forward

Expression of CNT30565287

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LVTTLAAQDSSLYSSTKCNCFIRVHTLVRLFPIKVLLEELLNFGNPGASANKNNFIYLILL*

>peptide 2 (43 aa)
MAFFTGPMVFLNKSLFNSSNRALFARSHSLLSFPRALLSLLMSF

>peptide 3 (40 aa)
SSPPSPLKIPPCTAAPNATASSGFTPLLGSFPSKYSLRSC*

Sequence

>CNT30565287
CTCGTCACCACCCTCGCCGCTCAAGATTCCTCCTTGTACAGCAGCACCAAATGCAACTGCTTCATCAGGGTTCACACCCTTGTTAGGCTCTTTCCCATCA
AAGTACTCCTTGAGGAGCTGTTGAACTTTGGGAATCCTGGTGCTTCCGCCAACAAGAACAATTTCATCTATCTGATTCTTCTCTAATCCAGCATCTTCCA
TGGCCTTCTTCACAGGTCCCATGGTTTTTCTGAACAAATCATTGTTCAATTCTTCGAACCGAGCTCTCTTTGCACGCTCACATTCTCTCCTCAGTTTTCC
AAGAGCTCTGTTGTCCTTGCTGATGTCCTTTC